PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn205651
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 96aa    MW: 10819 Da    PI: 4.3423
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn205651genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.42.8e-121647132
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                     +g+WT+eEd +l+++++ +G++ WktIa + g
       Achn205651 16 KGAWTEEEDRKLAEYIEVHGSKKWKTIATKSG 47
                     79**************************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.15E-8945IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-11945IPR009057Homeodomain-like
PROSITE profilePS500907.2941143IPR017877Myb-like domain
PfamPF002495.1E-101652IPR001005SANT/Myb domain
CDDcd001676.92E-61843No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
MASKNVKGCA KKVYNKGAWT EEEDRKLAEY IEVHGSKKWK TIATKSGMEA CAKENGDVEF  60
TFDVDDFFDF STEGTYGLEW VNKFLEVDDV ECVTE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028121494.14e-21transcription factor WER-like isoform X1
RefseqXP_028121495.12e-21transcription factor TT2-like isoform X2
TrEMBLV5SMS93e-28V5SMS9_GOSHI; MYB2 splice variant GGL1-3
STRINGXP_002535033.15e-26(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.14e-11MYB-like 102