PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn205991

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

FAR1

Protein Properties

Length: 1133aa MW: 128508 Da PI: 6.7857

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn205991	genome	IKGC	View CDS

Signature Domain? help Back to Top

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF49879	1.45E-12	64	191	IPR008984	SMAD/FHA domain
Gene3D	G3DSA:2.60.200.20	1.3E-19	75	193	IPR000253	Forkhead-associated (FHA) domain
PROSITE profile	PS50006	10.665	78	142	IPR000253	Forkhead-associated (FHA) domain
Pfam	PF00498	2.2E-10	80	159	IPR000253	Forkhead-associated (FHA) domain
CDD	cd00060	6.29E-8	80	159	No hit	No description
Pfam	PF03101	2.3E-6	298	384	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.9E-28	498	592	IPR018289	MULE transposase domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1133 aa Download sequence Send to blast
MAEEDENPRT PVIPDPSPTN SRDEATSSSH HDDNGALSPV DFMDSVALSI SSQPIDNSDP 60 AVWGALTAVS DIASSDEHCI GRLVDDMRFQ IESNAVSANH CRIYRKRGAA EDAENPSTFS 120 TFLQDTSLFY STNGTYLNWE KLTKTSPEAK LHHGDIISFA APPQHELAVA FVFREVFTSN 180 SLNDGALVKR KADEIVSERK RLKSVGVGAP EGPSLDDFQS PQRSNTELRS QLESQVLTVD 240 TLCNENRVAF EFHESDDAST QCSKVGSEPV MDYSSEFTTH KIFKSREALL LWVREVGRRN 300 GFFVVIKTSD AGDSFKRPRI TFGCERSGYH RDTRRNKEGN SKKKLKMFGT KKCGCPFALK 360 GQKLATDDDW ALQVLCGVHN HPIAEHLVGH SYAGRLSEEE TSLLVDMSKS LVRPKEILVT 420 LKQRDALNAT TMKTIYNARH RYKVVEKARR SQMQLLLDQL VQYKYIEQHR SCENSEIVTD 480 LFWAHPVGLE LLRAFPRVLI MDCTYKTNRY RLPLLEIVGV TSTEMTFSVA FAYLQHEQED 540 NYTWALGVLR SLMDECALPD VIVSEREMDL MNAIDSVFPT TRHLLCRWHI NKDVMAKCKK 600 SFETEDKWDK FINQWNMVVL SSTEGEYIQQ LATFNKEFST YPEALEYVTS SWLDTYKNRF 660 VAAWTDTCMH CGNATTNRAE GSHTKLKRQL GSSQGSFESS WTKIHSLIEL QHADIKSSFE 720 KSLTIQHNLK PIEFKELWGR ISASALDMIL VEMKRASFVG CDVVVCGCVF RRTYGLPCAH 780 EIADYMRDGR SIPLYVIHPH WRKLDMVPTP KSSTIDCQLE LDLIAQRFNE CDSTTKLQLL 840 KKLRELVTST DCNSLTQQKV KSKTQGRKNS KIDTSTNRDP CASELVAYGQ DSRADVMAAI 900 PEVSVKPKRR PKEKVYRTRT LKSILYVDAF PVGLRPYFRH VKDVAADGNC GFRVIGGLMG 960 FGEEGWLQVR KDLLSELHSH ADLYRQLYGT QDRVDGLTHT LSDFEICPGY DRWMIMPDMG 1020 HLISSCYNVV LCHLSLKQCL TFLPLRSEPI PTSSRKEITI GFVNDNHFVE VFLLPGHPVP 1080 PIATNWHRHH IPCAEGWDTA YNHRIQHFQD IVGSDVVTRE TIELELELEN GH*

Sequence ? help Back to Top

Protein Sequence Length: 1133 aa Download sequence Send to blast

MAEEDENPRT PVIPDPSPTN SRDEATSSSH HDDNGALSPV DFMDSVALSI SSQPIDNSDP  60
AVWGALTAVS DIASSDEHCI GRLVDDMRFQ IESNAVSANH CRIYRKRGAA EDAENPSTFS  120
TFLQDTSLFY STNGTYLNWE KLTKTSPEAK LHHGDIISFA APPQHELAVA FVFREVFTSN  180
SLNDGALVKR KADEIVSERK RLKSVGVGAP EGPSLDDFQS PQRSNTELRS QLESQVLTVD  240
TLCNENRVAF EFHESDDAST QCSKVGSEPV MDYSSEFTTH KIFKSREALL LWVREVGRRN  300
GFFVVIKTSD AGDSFKRPRI TFGCERSGYH RDTRRNKEGN SKKKLKMFGT KKCGCPFALK  360
GQKLATDDDW ALQVLCGVHN HPIAEHLVGH SYAGRLSEEE TSLLVDMSKS LVRPKEILVT  420
LKQRDALNAT TMKTIYNARH RYKVVEKARR SQMQLLLDQL VQYKYIEQHR SCENSEIVTD  480
LFWAHPVGLE LLRAFPRVLI MDCTYKTNRY RLPLLEIVGV TSTEMTFSVA FAYLQHEQED  540
NYTWALGVLR SLMDECALPD VIVSEREMDL MNAIDSVFPT TRHLLCRWHI NKDVMAKCKK  600
SFETEDKWDK FINQWNMVVL SSTEGEYIQQ LATFNKEFST YPEALEYVTS SWLDTYKNRF  660
VAAWTDTCMH CGNATTNRAE GSHTKLKRQL GSSQGSFESS WTKIHSLIEL QHADIKSSFE  720
KSLTIQHNLK PIEFKELWGR ISASALDMIL VEMKRASFVG CDVVVCGCVF RRTYGLPCAH  780
EIADYMRDGR SIPLYVIHPH WRKLDMVPTP KSSTIDCQLE LDLIAQRFNE CDSTTKLQLL  840
KKLRELVTST DCNSLTQQKV KSKTQGRKNS KIDTSTNRDP CASELVAYGQ DSRADVMAAI  900
PEVSVKPKRR PKEKVYRTRT LKSILYVDAF PVGLRPYFRH VKDVAADGNC GFRVIGGLMG  960
FGEEGWLQVR KDLLSELHSH ADLYRQLYGT QDRVDGLTHT LSDFEICPGY DRWMIMPDMG  1020
HLISSCYNVV LCHLSLKQCL TFLPLRSEPI PTSSRKEITI GFVNDNHFVE VFLLPGHPVP  1080
PIATNWHRHH IPCAEGWDTA YNHRIQHFQD IVGSDVVTRE TIELELELEN GH*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	188	202	KRKADEIVSERKRLK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028126744.1	0.0	PKS-NRPS hybrid synthetase CHGG_01239-like
TrEMBL	A0A2R6QP95	0.0	A0A2R6QP95_ACTCH; PKS-NRPS hybrid synthetase
STRING	XP_008245831.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10536	2	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-17	FAR1-related sequence 5