PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn206031
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family LBD
Protein Properties Length: 197aa    MW: 21409.4 Da    PI: 7.7031
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn206031genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260129.41.6e-4010107197
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                 +C aCk+lrrkC++dCv+apyf ++q p++fa+vhk+FGasn +k+l ++p ++r d++ sl+yeA ar+rdPvyG+vg+i++lqqq+ +l++ela++
  Achn206031  10 PCGACKFLRRKCSRDCVFAPYFDSDQgPAHFAAVHKVFGASNASKMLLRVPAHKRLDTVVSLCYEALARVRDPVYGCVGHIFTLQQQVVNLQVELAYT 107
                 7***********************9999*******************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.1219111IPR004883Lateral organ boundaries, LOB
PfamPF031953.7E-3910106IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MGSNNSGAGP CGACKFLRRK CSRDCVFAPY FDSDQGPAHF AAVHKVFGAS NASKMLLRVP  60
AHKRLDTVVS LCYEALARVR DPVYGCVGHI FTLQQQVVNL QVELAYTPAR LSTFQCLPLP  120
QPPQPQSPSL ANFQSSSQMA LSSNASMFFD ASTSMELVSF CNAMDQEFED GDLQAIAREF  180
VSRYLLGVKV QPSNSQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-3741164116LOB family transfactor Ramosa2.1
5ly0_B6e-3741164116LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021280358.16e-92LOB domain-containing protein 31-like
SwissprotO813225e-68LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A2R6QPG71e-140A0A2R6QPG7_ACTCH; LOB domain-containing protein
STRINGEOX961942e-90(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.12e-54LOB domain-containing protein 31