PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn206251

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

TCP

Protein Properties

Length: 247aa MW: 26075.4 Da PI: 10.3876

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn206251	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	123.3	2.6e-38	28	115	3	88
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg 88 +kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ + + +++s+s+ss++ Achn206251 28 VKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStvSVSLRNNSSSHSSIS 115 79******************************************************************88853222222222233332 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.892	33	87	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	3.2E-34	33	120	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MSNSDGTANG AIIENQQRQQ PPNGALVVKK PPAKDRHSKV DGRGRRIRMP IICAARVFQL 60 TRELGHKSDG QTIEWLLRQA EPSIIAATGT GTTPASFSTV SVSLRNNSSS HSSISAALDP 120 KPMITPTPFI LGKRFRPDDD TVDGAAKDDV SAAVVGPAGG FWALPARPDF GQVWSFAAAP 180 PDMVMPSPAM TSQPPFTGRF IQQQPMGEAS AARVGNYLPI AQGHLNLLAS LSGAPAASSS 240 RREDER*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK240798	3e-70	AK240798.1 Oryza sativa Japonica Group cDNA, clone: J065002G04, full insert sequence.
GenBank	AP004776	3e-70	AP004776.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0452F04.
GenBank	AP014958	3e-70	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBank	CP012610	3e-70	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028051557.1	1e-125	transcription factor TCP7
Swissprot	Q9FMX2	1e-90	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A2R6PGI9	1e-177	A0A2R6PGI9_ACTCH; Transcription factor like
STRING	VIT_10s0042g00170.t01	1e-113	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3951	22	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	4e-61	TCP family protein