PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn206741
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 234aa    MW: 25735.2 Da    PI: 7.2565
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn206741genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH474.7e-155097354
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  Achn206741 50 KSHSEAERRRRERINNHLAKLRSLLPST----TTKTDKASLLAEVIHHVKEL 97
                79*************************8....6*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.4124797IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.44E-450100No hitNo description
SuperFamilySSF474591.83E-1450103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-125097IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.1E-1550102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-1253103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2602.8E-5134191No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MQFGYDGPTS SDQLRLISDA LLGQVGHPGS AQAQLSAQEL MDAKAIAASK SHSEAERRRR  60
ERINNHLAKL RSLLPSTTTK TDKASLLAEV IHHVKELKLQ TSLIAETSPV PTELDELTVA  120
DASDEDGNFV IKASLCCEDR SDLLPDLIRT LKALRLKTLR AEITTLGGRM RNVLFITGDD  180
DLQQQQQQQQ CSVSSIQEAL KGVMRKARVD HEDSSGGVKR QRIHVNVLEH RSI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15560ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028127200.11e-104transcription factor bHLH30-like
SwissprotQ9S7Y11e-83BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A2R6PH501e-166A0A2R6PH50_ACTCH; Transcription factor bHLH30 like
STRINGcassava4.1_010668m1e-103(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40832444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.15e-68bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]