PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn206901
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family M-type_MADS
Protein Properties Length: 196aa    MW: 21440.2 Da    PI: 6.0699
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn206901genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.88.8e-211967149
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                k+i+  s+ qvtfskR++g++KKA  LSvLC+++vavi +s+ g+++ +
  Achn206901 19 KKIQKRSQLQVTFSKRKAGLFKKAGDLSVLCGVDVAVIAVSPAGNVFAF 67
                678999999************************************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.5E-271170IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.7171171IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-241281IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-171333IPR002100Transcription factor, MADS-box
PfamPF003191.4E-212067IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-173348IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-174869IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
METSEKKKTT RGRQRIEIKK IQKRSQLQVT FSKRKAGLFK KAGDLSVLCG VDVAVIAVSP  60
AGNVFAFGSP SADAVVNRFL GRDSGKDVGH GGQWKERYGE VEREREKAAG GGGFWWDRPV  120
GELGLGELER YMAALEELKC KVRRRADELA VAEVAGEMES DLPENFLDSV SGTGGAMVDP  180
FCGFEENYFD FGCNY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002264830.29e-44PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A2R6Q2101e-137A0A2R6Q210_ACTCH; Agamous-like MADS-box protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-28AGAMOUS-like 62