PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn206911
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family M-type_MADS
Protein Properties Length: 254aa    MW: 27939.1 Da    PI: 10.1796
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn206911genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF671.8e-2183131149
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 
                 k+i+  s+ qvtfskR++g++KKA ELSvLC+++vav+ +s+ g+++ +
  Achn206911  83 KKIQKRSQLQVTFSKRKAGLFKKAGELSVLCGVDVAVVAVSPAGNVFAF 131
                 678999999************************************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.4E-2775134IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.10975135IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-2476146IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-177797IPR002100Transcription factor, MADS-box
PfamPF003193.8E-2284131IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-1797112IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-17112133IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MKGSNEKKNQ KLSSDQPNLA TNYPKNTGPR FNCCLKHTLT TFISPCPLSP DLSLSLSLKR  60
NSQAMETSEK KKTTRGRQRI EIKKIQKRSQ LQVTFSKRKA GLFKKAGELS VLCGVDVAVV  120
AVSPAGNVFA FGSPSANAVV NRFLGRNCGK DVGLGGQWKE RYEEVEREIE KAAGGGGFWW  180
GRPVEELGLG ELERYMAALE ELKCKVMGRA DELAVATVAV AVDMETDFAG EFLGFRQRHQ  240
RRIGGSWFCG KLF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028061661.12e-41agamous-like MADS-box protein AGL62
TrEMBLA0A2R6Q2106e-94A0A2R6Q210_ACTCH; Agamous-like MADS-box protein
STRINGXP_002532452.15e-37(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-24AGAMOUS-like 62