PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn207251

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

SRS

Protein Properties

Length: 182aa MW: 18758.6 Da PI: 4.9333

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn207251	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	40.6	8.7e-13	12	41	125	154
DUF702 125 dgeeelaYqtavsigGhvfkGiLydqGlee 154 ++e+ +aYqtav+igGh+fkGiLydqG ++ Achn207251 12 NKENWYAYQTAVNIGGHLFKGILYDQGSDD 41 56778**********************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	4.0E-10	12	40	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01624	4.1E-13	12	38	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MYTSECCEGG RNKENWYAYQ TAVNIGGHLF KGILYDQGSD DHYMLSPGAN TSSSGGLNLI 60 AATSNPPPPP PPPFAAAAAS TCTAAMAAGS PSFIHDPSHN VYQPPLNTFI SAVEATTVVA 120 SLLLRAYCLV APPLPCFLAI PCLSVTTIAA LLCLRVTAAT VLPLVALFVD AGACWTLEIS 180 G*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2R6RIR5	4e-24	A0A2R6RIR5_ACTCH; Protein SHI RELATED SEQUENCE like

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19790.2	1e-10	SHI-related sequence 7