PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn207851
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB
Protein Properties Length: 201aa    MW: 22325.8 Da    PI: 6.3978
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn207851genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.97.2e-111154344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT + d+ + +a + +  +   +W++Ia++++ g+t +++k+++
       Achn207851 11 SWTRDQDKAFENALAIYSEDsvdQWEKIAAMVP-GKTVEEIKNHY 54
                     7********************************.**********9 PP
2Myb_DNA-binding37.84.5e-12117161347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ +v+++G+g+W++I+      R + q+ s+ qky
       Achn207851 117 AWTEEEHRLFLLGVEKYGKGDWRSISLNSVVPRMPTQVASHAQKY 161
                      6*************************999977************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-6458IPR009057Homeodomain-like
PROSITE profilePS5129310.477762IPR017884SANT domain
SMARTSM007177.5E-10860IPR001005SANT/Myb domain
SuperFamilySSF466896.17E-121061IPR009057Homeodomain-like
CDDcd001671.40E-91158No hitNo description
PfamPF002491.2E-81154IPR001005SANT/Myb domain
PROSITE profilePS5129417.504109166IPR017930Myb domain
SuperFamilySSF466893.66E-13113166IPR009057Homeodomain-like
SMARTSM007172.4E-8114164IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.6E-14115163IPR006447Myb domain, plants
CDDcd001678.20E-10117162No hitNo description
PfamPF002497.3E-10117161IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-9117160IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MSSNRTCNSS SWTRDQDKAF ENALAIYSED SVDQWEKIAA MVPGKTVEEI KNHYVILLED  60
INDFTLPHYV PSVNDYTNIS GDFGVGKMGS HYGQMQSDSL HGGKSSRLDQ EWRRGIAWTE  120
EEHRLFLLGV EKYGKGDWRS ISLNSVVPRM PTQVASHAQK YFIPLSSANK EGRRSSIHDI  180
TSVGGGDTST LRGPITGKID *
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028094516.13e-95transcription factor SRM1
RefseqXP_028094517.13e-95transcription factor SRM1
RefseqXP_028094518.13e-95transcription factor SRM1
RefseqXP_028094519.13e-95transcription factor SRM1
SwissprotQ9FNN62e-64SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A2R6S2X61e-121A0A2R6S2X6_ACTCH; Transcription factor DIVARICATA like
STRINGXP_010067021.14e-81(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44541329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.17e-67MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]