PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn208161
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family M-type_MADS
Protein Properties Length: 483aa    MW: 55348 Da    PI: 6.8633
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn208161genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF75.83.4e-24953145
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                kr e++snrqvt+skRrngilKKA+ELS+LCd+++ +++fs+tgk
  Achn208161  9 KRLESTSNRQVTYSKRRNGILKKAKELSILCDIDIILLMFSPTGK 53
                689****************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.3E-32160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.805161IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.45E-26287IPR002100Transcription factor, MADS-box
CDDcd001201.55E-26257No hitNo description
PRINTSPR004041.2E-19323IPR002100Transcription factor, MADS-box
PfamPF003198.2E-211156IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-192338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-193859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MGRVKLKIKR LESTSNRQVT YSKRRNGILK KAKELSILCD IDIILLMFSP TGKPTLFLGE  60
RSNIEEVIAK FVQLTPQERA KSCWSNADKI DNIEHLRQLE DSLRESLNRI QMEKLRANAL  120
SILRDSEEPK QPMVEEQSRA FVNELVKDRM REDPHPIPRT MEEGRGIMVQ GRLVLKFVGR  180
TDGGELDRCD SSIHLSGDLR ELIEPPCSGE LAVLFPHGMH LPLMMGGVKE SQSVSWLHSN  240
ENQHMLLSSQ PRFLPQRDAE CSTYPSTYPS LSNYSDYFSP GKTAFENTRP VDNTGQDGGT  300
LNKLDAAACL RLQLNDQYPY QLYSSLDLPE AKKLNPESQM NLQGHPFDYD VNSSVQLPRP  360
IFDNLNHTWV PTSEPFTISM LSDNPYSQFD HLRRPSIHAP NFLLHARKVI LASLLDKVTE  420
NDRCETHLLQ VAEIRIWENE VASCRQICLD RRVVDAEFHF LHNYQKQLEF HSVHTNRMKF  480
VT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028117483.11e-117agamous-like MADS-box protein AGL65
TrEMBLA0A2R6QH241e-178A0A2R6QH24_ACTCH; Agamous-like MADS-box protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76402124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.11e-38AGAMOUS-like 65