PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn210611
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HD-ZIP
Protein Properties Length: 212aa    MW: 24714.8 Da    PI: 5.7935
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn210611genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.75.4e-2055107456
                 -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 ++++++eq+++Le  F +++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  Achn210611  55 KRKLSEEQVNQLEMSFGNEHNLESERKDRLASELGLDPRQVAVWFQNRRARWK 107
                 45899***********************************************9 PP
2HD-ZIP_I/II1192.5e-3854144292
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  +kr+ls+eqv++LE+sF +e++Le+erK +la+eLgl+prqvavWFqnrRAR+ktk+lE++y++Lk+++++ + e++rLe+ev +L+e+l+
   Achn210611  54 RKRKLSEEQVNQLEMSFGNEHNLESERKDRLASELGLDPRQVAVWFQNRRARWKTKKLEEEYSKLKNEHETTVVEKCRLETEVLKLKERLS 144
                  8**************************************************************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.55249109IPR001356Homeobox domain
SMARTSM003893.2E-1852113IPR001356Homeobox domain
SuperFamilySSF466897.7E-1854118IPR009057Homeodomain-like
CDDcd000862.41E-1654110No hitNo description
PfamPF000463.0E-1755107IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.7E-2056116IPR009057Homeodomain-like
PRINTSPR000311.3E-58089IPR000047Helix-turn-helix motif
PROSITE patternPS00027084107IPR017970Homeobox, conserved site
PRINTSPR000311.3E-589105IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MTTNMDHSQV EDEMVVISQF YTGIYSQLVP QQGEAKPRRR RKRSKGEGNS GVLRKRKLSE  60
EQVNQLEMSF GNEHNLESER KDRLASELGL DPRQVAVWFQ NRRARWKTKK LEEEYSKLKN  120
EHETTVVEKC RLETEVLKLK ERLSDTEKEV QRMLEKCDGV SSNSPSSPFS MEAIGPPFVG  180
EFGMEGFENI FYAPENNYIY HGMDYWVDLY M*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13856RRRKRSKGEGNSGVLRKRK
24056RKRSKGEGNSGVLRKRK
35257LRKRKL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00473DAPTransfer from AT4G36740Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028109158.12e-95homeobox-leucine zipper protein ATHB-40-like
SwissprotO232083e-72ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
SwissprotQ9ZU705e-72ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21
TrEMBLA0A2R6PAJ11e-155A0A2R6PAJ1_ACTCH; Homeobox-leucine zipper protein like
STRINGXP_009590483.11e-92(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12892480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.14e-74homeobox protein 40
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]