PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn211251
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family FAR1
Protein Properties Length: 222aa    MW: 25768.8 Da    PI: 4.8062
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn211251genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR136.31.8e-11155202250
        FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktek 50 
                 fYn+Y+k+ GF vrk   +ksk++g +++ +f C keg+ree+ kk + 
  Achn211251 155 FYNRYSKTKGFGVRKGGVRKSKKDGCVIDCRFFCFKEGFREERYKK-NA 202
                 9******************************************998.33 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.9E-9155201IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MTAGGLQSTV MTIDWASGFQ STTMATRWVQ SKRRRLDPSI DSSPTHPLIV RFESCSDESA  60
PVIVMTMTPR ELFSDTRLLL FRNSKSYDVW EYFDTEIYDE EEHIDELHGH EEHAGDDTED  120
RLEDLNMENK EIDVNNVEKP YVGMKFESND DAYVFYNRYS KTKGFGVRKG GVRKSKKDGC  180
VIDCRFFCFK EGFREERYKK NAAIKKGIAE RLELDVEQEY M*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13135KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-