PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn212761
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 259aa    MW: 29084.2 Da    PI: 7.0955
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn212761genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding452.6e-141462146
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT..TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmg..kgRtlkqcksrwqk 46
                     +g+W++eEd +l+d ++++G+g +W + +++     gRt++++k++w++
       Achn212761 14 KGPWSPEEDSKLKDFIEKHGTGgNWIALPKKAAqlSGRTDNDIKNYWNT 62
                     79*********************88888888888889**********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.9E-20568IPR009057Homeodomain-like
SuperFamilySSF466891.25E-12868IPR009057Homeodomain-like
PROSITE profilePS5129418.058968IPR017930Myb domain
SMARTSM007174.4E-121366IPR001005SANT/Myb domain
PfamPF002499.4E-131462IPR001005SANT/Myb domain
CDDcd001676.89E-111664No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDSKLKDFIE KHGTGGNWIA LPKKAAQLSG RTDNDIKNYW  60
NTKLKKKVLA MSNYNNNPIL LNHKKNITPH DQPNTSLLQQ TPRPQFQSYF NPITSLLPNF  120
PITNGYNNYS FTPSLLQPFM FDQASSSSDG SCSHGKEIKK EENMGLQSCF SNGYNEENQK  180
FMLDFGNYNG GETLVSGNGY FGNFSPLECG VEEVKKLIGN SGATSDHHDN VNNSFFFYND  240
DENKTQERGL YYNTASYY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021611134.16e-51transcription factor RAX2-like
TrEMBLA0A2R6P7I41e-173A0A2R6P7I4_ACTCH; Transcription factor like
STRINGcassava4.1_030463m2e-50(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.17e-33MYB family protein