PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn212871
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 256aa    MW: 27467.9 Da    PI: 6.9286
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn212871genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.00039110132123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 y+C+ C++sF++   L  H  +H
  Achn212871 110 YECKTCNRSFPSFQALGGHRASH 132
                 99**********99999998887 PP
2zf-C2H213.90.00015173195123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++Cg  Fs+   L  H+r+H
  Achn212871 173 HECSICGSEFSSGQALGGHMRRH 195
                 78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.7E-13109134IPR007087Zinc finger, C2H2
SuperFamilySSF576677.17E-9109132No hitNo description
SMARTSM003550.06110132IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.741110137IPR007087Zinc finger, C2H2
PROSITE patternPS000280112132IPR007087Zinc finger, C2H2
SuperFamilySSF576677.17E-9168195No hitNo description
Gene3DG3DSA:3.30.160.608.9E-4171195IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.6E-11173196IPR007087Zinc finger, C2H2
SMARTSM003550.02173195IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.827173200IPR007087Zinc finger, C2H2
PROSITE patternPS000280175195IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MESAEEFTAS NDHVPVLKGK RSKRQRPIST STSSTTGGSG GDGVYFSTPS PTSSAEISTS  60
DDEDEDMANC LILLAQGLAP PPAEVAEGKI IKLNSLRLAA AGGKSGLYVY ECKTCNRSFP  120
SFQALGGHRA SHKKPKTDAK PTIPPTPPEE NCELTKIPPP LPLTIANKSN KIHECSICGS  180
EFSSGQALGG HMRRHRTAPT ARAAASIESD DHYEKKRMML PLDLNLPAPL DQDDLHRDSK  240
YPFFFNGPAL VDCQY*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028064146.16e-77zinc finger protein ZAT5-like
SwissprotQ681X43e-57ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLA0A2R6P7B90.0A0A2R6P7B9_ACTCH; Zinc finger protein
STRINGXP_010243202.11e-69(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12622480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.18e-40C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]