PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn214251
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family WRKY
Protein Properties Length: 305aa    MW: 34088.2 Da    PI: 7.1093
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn214251genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.41.9e-303088260
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
        WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60
                dDgynWrKYGqK+vk+ e+prsYY+C+ ++Cp kk +ers +++++++i+Y+g+Hnh+k
  Achn214251 30 DDGYNWRKYGQKQVKERENPRSYYKCSNPNCPRKKIIERSFSNGHITKIVYKGNHNHPK 88
                8********************************************************85 PP
2WRKY105.72.5e-33176234159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGqK+vkg+++prsYY+Cts+gCpv+k+ver+++d + v++tYeg+Hnhe
  Achn214251 176 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSQGCPVRKHVERASHDLREVITTYEGKHNHE 234
                 59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-261989IPR003657WRKY domain
PROSITE profilePS5081123.9732489IPR003657WRKY domain
SuperFamilySSF1182904.58E-242789IPR003657WRKY domain
SMARTSM007742.8E-302988IPR003657WRKY domain
PfamPF031061.5E-223087IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.1E-37161236IPR003657WRKY domain
SuperFamilySSF1182901.96E-29168236IPR003657WRKY domain
PROSITE profilePS5081138.492171236IPR003657WRKY domain
SMARTSM007748.6E-39176235IPR003657WRKY domain
PfamPF031066.3E-26177234IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MGFEEPTETE TNSQIHRFQS DYDQRNQTSD DGYNWRKYGQ KQVKERENPR SYYKCSNPNC  60
PRKKIIERSF SNGHITKIVY KGNHNHPKPQ SVRRSSANQI PDESFFSHGS GPLDSAATME  120
NSSITAGDDD FDEDEPDSKR WQVEGESEGI SSSSSLSGGG REPRVVVQTR SDIDILDDGY  180
RWRKYGQKVV KGNPNPRSYY KCTSQGCPVR KHVERASHDL REVITTYEGK HNHEVPGPRG  240
GGSHSAARPL PITATAAAAI RPLAMSHSST TTNYSMTNAQ YVGNVFSTAN EETRDDMFSE  300
LLLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-3530236877Probable WRKY transcription factor 4
2lex_A5e-3530236877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:26025535). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:19199048, PubMed:26025535). Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (PubMed:15618416, PubMed:19199048, PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:26025535}.
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:15618416, PubMed:19199048). Slightly down-regulated by gibberellic acid (GA) (PubMed:15618416). Accumulates in response to jasmonic acid (MeJA) (By similarity). {ECO:0000250|UniProtKB:Q6B6R4, ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048}.
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027329545.11e-124WRKY transcription factor WRKY24-like isoform X1
RefseqXP_027329546.11e-124WRKY transcription factor WRKY24-like isoform X2
RefseqXP_027329547.11e-124WRKY transcription factor WRKY24-like isoform X3
SwissprotQ6B6R41e-97WRK24_ORYSI; WRKY transcription factor WRKY24
SwissprotQ6IEQ71e-97WRK24_ORYSJ; WRKY transcription factor WRKY24
TrEMBLA0A2R6QST40.0A0A2R6QST4_ACTCH; WRKY transcription factor
STRINGGLYMA02G39870.11e-117(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22862460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07100.26e-82WRKY DNA-binding protein 26
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang ZL, et al.
    A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells.
    Plant Mol. Biol., 2009. 70(1-2): p. 139-51
    [PMID:19199048]
  3. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]
  4. Zhang L, et al.
    Three WRKY transcription factors additively repress abscisic acid and gibberellin signaling in aleurone cells.
    Plant Sci., 2015. 236: p. 214-22
    [PMID:26025535]