PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn216491
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HD-ZIP
Protein Properties Length: 827aa    MW: 90885.1 Da    PI: 6.3152
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn216491genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.1e-18563357
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Achn216491  5 KYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 63
                5679*****************************************************97 PP
2START179.12.6e-561493572205
                 HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXX CS
       START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvael 98 
                 +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++l+v+ ++  g+++l +++l
  Achn216491 149 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPT-RVAEILKDRPSWFRDCRAVDVLNVLPTAngGTIELLYMQL 246
                 7899******************************************************.8888888888****************9999********** PP

                 TTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHH CS
       START  99 qalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaega 193
                 +a+++l+p Rdf+ +Ry+  +++g++v++++S++++q+ p     +++vRae+lpSg+li+p+++g+s +++v+h++l++++++++lr+l++s+++ ++
  Achn216491 247 YAPTTLAPaRDFWLLRYTSVMEDGSLVVCERSLSNTQNGPAmppVQNFVRAEMLPSGYLIRPCEGGGSIIHIVDHMNLEAWSVPEVLRPLYESSTVLAQ 345
                 **************************************99988899***************************************************** PP

                 HHHHHHTXXXXX CS
       START 194 ktwvatlqrqce 205
                 kt++a+l+++++
  Achn216491 346 KTTMAALRQLRQ 357
                 ********9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.758164IPR001356Homeobox domain
SMARTSM003891.2E-15268IPR001356Homeobox domain
CDDcd000869.09E-17565No hitNo description
SuperFamilySSF466898.98E-17568IPR009057Homeodomain-like
PfamPF000462.9E-16663IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-18763IPR009057Homeodomain-like
CDDcd146861.12E-65796No hitNo description
PROSITE profilePS5084825.706139354IPR002913START domain
CDDcd088752.80E-79143359No hitNo description
SMARTSM002347.4E-43148358IPR002913START domain
SuperFamilySSF559617.83E-38148360No hitNo description
Gene3DG3DSA:3.30.530.206.1E-24148355IPR023393START-like domain
PfamPF018527.8E-54149357IPR002913START domain
PfamPF086709.1E-53683825IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 827 aa     Download sequence    Send to blast
MDNGKYVRYT PEQVEALERL YHECPKPSSI RRQQLIRECP ILSNIEPKQI KVWFQNRRCR  60
EKQRKEASRL QAVNRKLTAM NKLLMEENDR LQKQVSHLVY ENGYFRQHTQ NTTLATKDTS  120
CESVVTSGQH HLTPQHPPRD ASPAGLLSIA EETLAEFLSK ATGTAVEWVQ MPGMKPGPDS  180
IGIVAISHGC TGVAARACGL VGLEPTRVAE ILKDRPSWFR DCRAVDVLNV LPTANGGTIE  240
LLYMQLYAPT TLAPARDFWL LRYTSVMEDG SLVVCERSLS NTQNGPAMPP VQNFVRAEML  300
PSGYLIRPCE GGGSIIHIVD HMNLEAWSVP EVLRPLYESS TVLAQKTTMA ALRQLRQIAQ  360
EVSPSNVTNW GRRPAALRAL SQRLSRGFNE AVNGFTDEGW SMMGNDGMDD VTILVNSSPD  420
KLMGLNLTFA NGFPAVSNAV LCAKASMLLQ NVPPAILLRF LREHRSEWAD NSIDAYSAAA  480
VKVGPCSLPG ARVGSFGGQV ILPLAHTIEH EELLEVIKLE GVAHCPEDAI MPRDMFLLQL  540
CSGMDENAIG TCAELIFAPI DASFADDAPL LPSGFHIIPL DSGKEASSPN RTLDLASALE  600
IGPSGNKTSN DYAANSGSTR SVMTIAFEFA FESHMQENVA SMARQYVRSI ISSVQRVALA  660
LSPSNLSSHG GLRTPLGTPE ANTLARWICH SYRCFLGVEL LKSGSEGSET TLKMLWHHTD  720
AIMCCSLKAL PVFTFANQAG LDMLETTLVA LQDITLEKIF DDHGRKTLCS EFPQIMQQGF  780
ACLQGGICLS SMGRPVSYER AVAWKVLNEE ENAHCICFMF MNWSFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028058078.10.0homeobox-leucine zipper protein ATHB-15
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A2R6R0060.0A0A2R6R006_ACTCH; Homeobox-leucine zipper protein like
STRINGEOY268990.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]