PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn217531

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

WRKY

Protein Properties

Length: 576aa MW: 62709.1 Da PI: 6.1568

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn217531	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.3	2.1e-30	236	295	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r+aed +++++tYeg+Hnh+ Achn217531 236 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApSCPVRKQVQRCAEDMSILITTYEGTHNHP 295 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	8.7E-32	221	297	IPR003657	WRKY domain
SuperFamily	SSF118290	1.83E-27	228	297	IPR003657	WRKY domain
PROSITE profile	PS50811	28.461	231	297	IPR003657	WRKY domain
SMART	SM00774	1.4E-36	236	296	IPR003657	WRKY domain
Pfam	PF03106	6.9E-27	237	295	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 576 aa Download sequence Send to blast
MEAALRKSGE GGVTKEDERV ESSIGEDGCR EEIILKVGNG TRDQEDDHNL KPLSPNQNLN 60 KDNQLETAKA EMGEVREENQ RLRMYLDRMM KDYQNLQMQF HDIVNQEAKE STNTDQSDQE 120 MTDQPELVSL SLGRTSSDPR KDEKAIRKGK EDQQDKEGLA LGLQSHFEAS KTGPIDESSI 180 KLSPENSLEA NKEAGEIWPP KTGLKTMRNE DDEASQQNPA KKARVSVRVR CDTPTMNDGC 240 QWRKYGQKIA KGNPCPRAYY RCTVAPSCPV RKQVQRCAED MSILITTYEG THNHPLPISA 300 TAMASTTSAA ASMLLSGSST SETAPASSAG LNFYHSDHNS KPRPFYLPNS SISSSPSYPT 360 ITLDLTSTTS SSSYHNINNK INPNFLPSAP RYNSSTSLNF SSLESNPIPM TWNSYGTQPY 420 NKNNQVGSSL SFSRQPQENF YHSLMQKSLL NPNPTQQALP QDTIAAATKA ITSDPSFQSA 480 LEAALTSIIG SNGGGGGGGG GNLGFQIGQN SMLGETFPFT SNFPSSTQNG NKCSSSHLNR 540 STSVMNSQLF LQPPLPFSSS KSKSTSPGDR DHGSD*

Sequence ? help Back to Top

Protein Sequence Length: 576 aa Download sequence Send to blast

MEAALRKSGE GGVTKEDERV ESSIGEDGCR EEIILKVGNG TRDQEDDHNL KPLSPNQNLN  60
KDNQLETAKA EMGEVREENQ RLRMYLDRMM KDYQNLQMQF HDIVNQEAKE STNTDQSDQE  120
MTDQPELVSL SLGRTSSDPR KDEKAIRKGK EDQQDKEGLA LGLQSHFEAS KTGPIDESSI  180
KLSPENSLEA NKEAGEIWPP KTGLKTMRNE DDEASQQNPA KKARVSVRVR CDTPTMNDGC  240
QWRKYGQKIA KGNPCPRAYY RCTVAPSCPV RKQVQRCAED MSILITTYEG THNHPLPISA  300
TAMASTTSAA ASMLLSGSST SETAPASSAG LNFYHSDHNS KPRPFYLPNS SISSSPSYPT  360
ITLDLTSTTS SSSYHNINNK INPNFLPSAP RYNSSTSLNF SSLESNPIPM TWNSYGTQPY  420
NKNNQVGSSL SFSRQPQENF YHSLMQKSLL NPNPTQQALP QDTIAAATKA ITSDPSFQSA  480
LEAALTSIIG SNGGGGGGGG GNLGFQIGQN SMLGETFPFT SNFPSSTQNG NKCSSSHLNR  540
STSVMNSQLF LQPPLPFSSS KSKSTSPGDR DHGSD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-20	223	297	1	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269\|PubMed:20409007, ECO:0000269\|PubMed:24884371}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269\|PubMed:20409007}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028120991.1	0.0	probable WRKY transcription factor 72 isoform X1
Swissprot	A0A3Q7GFB5	1e-159	WK72A_SOLLC; WRKY transcription factor 72A
TrEMBL	A0A2R6PE13	0.0	A0A2R6PE13_ACTCH; WRKY transcription factor 72
STRING	XP_010256554.1	1e-179	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1945	24	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	9e-72	WRKY DNA-binding protein 72

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]