PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn218951

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

ARR-B

Protein Properties

Length: 784aa MW: 86083.4 Da PI: 4.6574

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn218951	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	26.4	1.6e-08	204	244	1	42
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLt 42 kpr++W+ eLH +Fv av+qL G+e+ + l+ ++ Lt Achn218951 204 KPRVVWSIELHGKFVAAVNQL-GIERISAQLELNQLQQSKLT 244 79*******************.88876666666666666665 PP
2	Response_reg	79.3	1.3e-26	23	131	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 vl vdD+p+ ++ll +l+k +y +v++ ++++ al++l+e++ +Dl++ D+ mp+mdG++ll+ e++lp+i+++a+++ +++ + + Ga Achn218951 23 VLAVDDDPTCLKLLDGLLRKCQY-QVTTSSQAKTALKMLRENKnrFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANSDTKLVMKGITHGAC 117 799******************.***********888888***************87754.558******************** PP EEEESS--HHHHHH CS Response_reg 96 dflsKpfdpeelvk 109 d+l+Kp+ +eel++ Achn218951 118 DYLVKPVRIEELRN 131 **********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF52172	1.85E-35	20	144	IPR011006	CheY-like superfamily
Gene3D	G3DSA:3.40.50.2300	3.3E-43	20	144	No hit	No description
SMART	SM00448	7.0E-32	21	133	IPR001789	Signal transduction response regulator, receiver domain
PROSITE profile	PS50110	43.702	22	137	IPR001789	Signal transduction response regulator, receiver domain
Pfam	PF00072	3.5E-24	23	132	IPR001789	Signal transduction response regulator, receiver domain
CDD	cd00156	1.93E-28	24	137	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.4E-8	201	246	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 784 aa Download sequence Send to blast
MTVEEIRGNC GRENSNFPLG MRVLAVDDDP TCLKLLDGLL RKCQYQVTTS SQAKTALKML 60 RENKNRFDLV ISDVHMPDMD GFKLLELVGL EMDLPVIMLS ANSDTKLVMK GITHGACDYL 120 VKPVRIEELR NIWQHVLRRK KFDSKSPTVD EACQGNGKSL KESEPTGNED KNGKVNRKRK 180 DEEEEEEEDE ENGEENEDLA TQKKPRVVWS IELHGKFVAA VNQLGIERIS AQLELNQLQQ 240 SKLTSDMFDS GCDPTIFTST SSLVDNIVPV GSLINSLPSA SSNPLFLQGN PQQTLSGGVF 300 GNQNSFKVNS LNSEPLNTGI SGSNFLSNGR CNENWRSTIQ VSKFSSNNPS SLSGTFNHDR 360 LPSNGMRTNN SSSGLHIQIN PLDFSSTDTI SAPLEDSREI RCQAGFVGDV QSMSQATDEK 420 CGDYKMDYTQ NSNHIFNTLN SMVPPNGAVG PVSWMLDQHN GVCNGKIDSS FISQSNGSPS 480 PLVQLSEIEK SATELKTRSN EDYHLGQMKL QGGLVHNSYD SLDDLMNEMI SQNSFKVNSL 540 NSEPLNTGIS GSNFLSNGRC NENWRSTIQV SKFSSNNPSS LSGTFNHDRL PSNGMRTNNS 600 SSGLHIQINP LDFSSTDTIS APLEDSREIR CQAGFVGDVQ SMSQATDEKC GDYKMDYTQN 660 SNHIFNTLNS MVPPNGAVGP VSWMLDQHNG VCNGKIDSSF ISQSNGSPSP LVQLSEIEKS 720 ATELKTRSNE DYHLGQMKLQ GGLVHNSYDS LDDLMNEMIS QDQNGPMLVD GEFGFDAYSF 780 GSC*

Sequence ? help Back to Top

Protein Sequence Length: 784 aa Download sequence Send to blast

MTVEEIRGNC GRENSNFPLG MRVLAVDDDP TCLKLLDGLL RKCQYQVTTS SQAKTALKML  60
RENKNRFDLV ISDVHMPDMD GFKLLELVGL EMDLPVIMLS ANSDTKLVMK GITHGACDYL  120
VKPVRIEELR NIWQHVLRRK KFDSKSPTVD EACQGNGKSL KESEPTGNED KNGKVNRKRK  180
DEEEEEEEDE ENGEENEDLA TQKKPRVVWS IELHGKFVAA VNQLGIERIS AQLELNQLQQ  240
SKLTSDMFDS GCDPTIFTST SSLVDNIVPV GSLINSLPSA SSNPLFLQGN PQQTLSGGVF  300
GNQNSFKVNS LNSEPLNTGI SGSNFLSNGR CNENWRSTIQ VSKFSSNNPS SLSGTFNHDR  360
LPSNGMRTNN SSSGLHIQIN PLDFSSTDTI SAPLEDSREI RCQAGFVGDV QSMSQATDEK  420
CGDYKMDYTQ NSNHIFNTLN SMVPPNGAVG PVSWMLDQHN GVCNGKIDSS FISQSNGSPS  480
PLVQLSEIEK SATELKTRSN EDYHLGQMKL QGGLVHNSYD SLDDLMNEMI SQNSFKVNSL  540
NSEPLNTGIS GSNFLSNGRC NENWRSTIQV SKFSSNNPSS LSGTFNHDRL PSNGMRTNNS  600
SSGLHIQINP LDFSSTDTIS APLEDSREIR CQAGFVGDVQ SMSQATDEKC GDYKMDYTQN  660
SNHIFNTLNS MVPPNGAVGP VSWMLDQHNG VCNGKIDSSF ISQSNGSPSP LVQLSEIEKS  720
ATELKTRSNE DYHLGQMKLQ GGLVHNSYDS LDDLMNEMIS QDQNGPMLVD GEFGFDAYSF  780
GSC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3r0j_A	4e-13	22	147	25	149	POSSIBLE TWO COMPONENT SYSTEM RESPONSE TRANSCRIPTIONAL POSITIVE REGULATOR PHOP
3r0j_B	4e-13	22	147	25	149	POSSIBLE TWO COMPONENT SYSTEM RESPONSE TRANSCRIPTIONAL POSITIVE REGULATOR PHOP
5ed4_A	4e-13	22	147	25	149	Response regulator
5ed4_B	4e-13	22	147	25	149	Response regulator
5ed4_E	4e-13	22	147	25	149	Response regulator
5ed4_F	4e-13	22	147	25	149	Response regulator
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027067929.1	1e-114	two-component response regulator ARR12-like
Refseq	XP_027067930.1	1e-114	two-component response regulator ARR12-like
Refseq	XP_027173593.1	1e-114	two-component response regulator ARR12
TrEMBL	A0A2R6R4V5	1e-174	A0A2R6R4V5_ACTCH; Two-component response regulator like
STRING	Solyc12g010330.1.1	1e-112	(Solanum lycopersicum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G25180.1	4e-82	response regulator 12