PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn219401
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 343aa    MW: 38300.9 Da    PI: 9.9771
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn219401genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.72.2e-074682341
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41
                      W++ E e +++a +++G   W+++a  +  +R+++++ 
       Achn219401 46 QWSKKELECFYEAYRKYGQA-WEKVAGAVR-NRSAEMVE 82
                     6*****************99.*********.****9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.17E-94092IPR009057Homeodomain-like
SMARTSM007170.00164391IPR001005SANT/Myb domain
PfamPF002491.1E-64687IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.5E-54686IPR009057Homeodomain-like
CDDcd001671.07E-44789No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MAPTRKSRSV NKRFSNYTEV SLDNNDGNPK KSRQRKRKLS NMLGTQWSKK ELECFYEAYR  60
KYGQAWEKVA GAVRNRSAEM VEALYNMNKA YLSLPDGTAS VVGLIAMMTD HYNVLEGSDS  120
GQESNGASPL SRKSKKGGRG KIRFHASKED LLLSPPVVST NDEYFPLLKW RHSDGCAVRK  180
RTPRVPVTYS FRKDDNDNND SPNKSRRNSQ LDDDVEHVAA LALTEASLRE VSPQVSPSPF  240
KQDHMKPSPF QSLETKHSQP ETQPEKSWAK LLGSAIKKDG LEVSLGSKGI ENGDYTRYIS  300
ALTEKGKRVF SKKEKVENII INQFDNGWEA FSGTGNGLNG DV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010241815.11e-100PREDICTED: protein ALWAYS EARLY 3-like isoform X1
TrEMBLA0A2R6QL420.0A0A2R6QL42_ACTCH; Protein ALWAYS EARLY like
STRINGXP_010241815.11e-100(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1589944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.22e-54DNA binding