PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn220201

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

NAC

Protein Properties

Length: 292aa MW: 33156.4 Da PI: 7.9048

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn220201	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	164.1	4.9e-51	6	134	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 lppGfrFhPtdeel+ +y+kkkv++ + +l ++i+++d+yk++PwdLp+k+ +++ew+fF++r++ky++g r+nr++ gyWkatg+dk++l++ + + Achn220201 6 LPPGFRFHPTDEELIIHYMKKKVSQPSSPLVSIIADIDLYKFNPWDLPAKAMFGDHEWFFFTPRNRKYPNGARPNRTAGCGYWKATGTDKPILNSgGLQ 104 79**************************999***********8888899***********************************94556 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +g+kk Lvfy+gr pkg ktdWvmheyrl Achn220201 105 CIGVKKALVFYEGRPPKGLKTDWVMHEYRL 134 6*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.67E-61	3	162	IPR003441	NAC domain
PROSITE profile	PS51005	60.143	6	162	IPR003441	NAC domain
Pfam	PF02365	2.0E-26	7	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MPNPNLPPGF RFHPTDEELI IHYMKKKVSQ PSSPLVSIIA DIDLYKFNPW DLPAKAMFGD 60 HEWFFFTPRN RKYPNGARPN RTAGCGYWKA TGTDKPILNS GGLQCIGVKK ALVFYEGRPP 120 KGLKTDWVMH EYRLLDDSSH SLPRVRGSMR LDDWVLCRVR EKNNPTQQIK EYSEESSFSS 180 ISGLNFTNTV NSIDSVNEIK AAYIESPKDS AEVDQQQQLH SFFNFQGGPS KPTTREINIS 240 HSNAKEYGSR TLKRSVSVAS FGEEFPMSKR IQTDPLEDME DTSIFQVCYL C*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-69	5	168	14	174	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility. {ECO:0000269\|PubMed:22278768}.
UniProt	Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269\|PubMed:17124321}.
UniProt	Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene coding for a functional protein (NAM-A1) and one extra pseudogene (NAM-B1) (PubMed:17124321). Plays a weaker role in terminal senescence than NAM-A1. {ECO:0000269\|PubMed:17124321, ECO:0000269\|PubMed:22278768}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt and cold treatments. {ECO:0000269\|PubMed:18813954}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028107486.1	1e-142	NAC domain-containing protein 72-like
Swissprot	A0SPJ6	2e-76	NAMB2_TRITD; NAC transcription factor NAM-B2
Swissprot	A0SPJ9	2e-76	NAM2_HORVV; NAC transcription factor NAM-2
Swissprot	Q8H4S4	4e-76	NAC10_ORYSJ; NAC domain-containing protein 10
TrEMBL	A0A2R6QLD7	0.0	A0A2R6QLD7_ACTCH; NAC transcription factor
STRING	POPTR_0004s04920.1	1e-96	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13390	11	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	8e-77	NAC domain containing protein 2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat. Science, 2006. 314(5803): p. 1298-301 [PMID:17124321]