PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn220211

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

NAC

Protein Properties

Length: 288aa MW: 32861 Da PI: 9.1992

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn220211	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	164.2	4.7e-51	12	140	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 lppGfrFhPtdeel+ +yLkkkv++ +++ ++i+ +d+yk++Pw+Lp k+ +e+ew+fFs+rd+ky++g r+nra++sgyWkatg+dk++ls+ +++ Achn220211 12 LPPGFRFHPTDEELIIHYLKKKVSSPMNPIVSIIAAIDLYKFNPWELPDKAMFGESEWFFFSPRDRKYPNGARPNRAAASGYWKATGTDKPILSSyGSQ 110 79**************************999***********7777899***********************************98888 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 vg+kk Lvfykgr pkg ktdW+m eyrl Achn220211 111 CVGVKKALVFYKGRPPKGIKTDWMMYEYRL 140 8*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.22E-61	7	167	IPR003441	NAC domain
PROSITE profile	PS51005	59.819	12	167	IPR003441	NAC domain
Pfam	PF02365	4.5E-26	13	140	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MEGIINMSTP FLPPGFRFHP TDEELIIHYL KKKVSSPMNP IVSIIAAIDL YKFNPWELPD 60 KAMFGESEWF FFSPRDRKYP NGARPNRAAA SGYWKATGTD KPILSSYGSQ CVGVKKALVF 120 YKGRPPKGIK TDWMMYEYRL LDDVHHSRRV RGSMRLDDWV LCRVRQKSNI LFPAKDSSES 180 DTKIFPQPDQ LGPFQEKDIM EKMNYLKNSE LSVPDQEGEV VGEHLIFGIN SEMQSPTILT 240 MKAALSKIKR VLSIGAMDEQ MPMSSPNKRL CTLNYINLDK SSIFEFS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-67	12	169	17	167	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-67	12	169	17	167	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-67	12	169	17	167	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-67	12	169	17	167	NO APICAL MERISTEM PROTEIN
3swm_A	7e-67	12	169	20	170	NAC domain-containing protein 19
3swm_B	7e-67	12	169	20	170	NAC domain-containing protein 19
3swm_C	7e-67	12	169	20	170	NAC domain-containing protein 19
3swm_D	7e-67	12	169	20	170	NAC domain-containing protein 19
3swp_A	7e-67	12	169	20	170	NAC domain-containing protein 19
3swp_B	7e-67	12	169	20	170	NAC domain-containing protein 19
3swp_C	7e-67	12	169	20	170	NAC domain-containing protein 19
3swp_D	7e-67	12	169	20	170	NAC domain-containing protein 19
4dul_A	7e-67	12	169	17	167	NAC domain-containing protein 19
4dul_B	7e-67	12	169	17	167	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with male fertility. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028088451.1	1e-163	NAC transcription factor 29-like
Swissprot	A2YMR0	1e-77	NAC10_ORYSI; NAC transcription factor ONAC010
TrEMBL	A0A2R6QLC0	0.0	A0A2R6QLC0_ACTCH; NAC transcription factor
STRING	POPTR_0004s04920.1	1e-110	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA17425	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	2e-78	NAC domain containing protein 25