PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn220531

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

NF-YA

Protein Properties

Length: 231aa MW: 25399.3 Da PI: 9.4558

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn220531	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	98.5	6.9e-31	10	66	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVNaKQy++I++RR +Rak+e+ +k+ k+rkpylh SRh hA+rRpRg+gGrF Achn220531 10 DGPIYVNAKQYHGIIRRRLSRAKAESVNKV-LKARKPYLHLSRHLHAMRRPRGCGGRF 66 57**************************.9***********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	4.4E-34	8	69	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	34.419	9	69	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.7E-27	12	66	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.4E-22	12	34	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	14	34	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	1.4E-22	43	66	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MLPLNLTTDD GPIYVNAKQY HGIIRRRLSR AKAESVNKVL KARKPYLHLS RHLHAMRRPR 60 GCGGRFLNSK TSKGAKCRNE PEKTGNGHHF QPAESQISEV LQSDSGNLSS PKEASGSRTN 120 LLGSEVTSLF YRGDVDHFAF NHIRPSVLSL TDMMNTGPGR AMPNLEVVEV DVIEVSISSL 180 DIVLASGVMY CKIVDLVCCP AMTYKCGVHV RDLEVVEVSI LSPNFKLLVK *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_A	4e-18	10	69	2	62	HAPB protein
4g92_A	4e-18	10	69	2	62	HAPB protein
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028119449.1	1e-81	nuclear transcription factor Y subunit A-10-like isoform X1
Refseq	XP_028119450.1	1e-81	nuclear transcription factor Y subunit A-10-like isoform X1
Refseq	XP_028119451.1	1e-81	nuclear transcription factor Y subunit A-10-like isoform X1
Swissprot	Q8LFU0	2e-34	NFYAA_ARATH; Nuclear transcription factor Y subunit A-10
TrEMBL	A0A2R6Q437	1e-115	A0A2R6Q437_ACTCH; Nuclear transcription factor Y subunit A-10 like
STRING	XP_006430046.1	3e-67	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3706	23	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06510.3	1e-36	nuclear factor Y, subunit A10

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Zhang M,Hu X,Zhu M,Xu M,Wang L Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis. Sci Rep, 2017. 7(1): p. 1395 [PMID:28469131]