PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn220621

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

C2H2

Protein Properties

Length: 492aa MW: 53683.5 Da PI: 8.251

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn220621	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.3	5.8e-05	93	115	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C+k F r nL+ H r H Achn220621 93 YICEVCHKGFQRDQNLQLHRRGH 115 89*******************88 PP
2	zf-C2H2	10.9	0.0014	199	217	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg+ Fsrk+++++H + Achn220621 199 DCGTIFSRKDSFVTHRAFC 217 8**************8765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.7E-6	92	115	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.5E-5	92	115	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.741	93	115	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.038	93	115	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	95	115	IPR007087	Zinc finger, C2H2
SMART	SM00355	150	134	164	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	3.6E-4	157	190	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	6.7E-6	164	189	No hit	No description
SMART	SM00355	210	169	189	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 492 aa Download sequence Send to blast
MKGDFAPVVV VLGMIVVVEF EDDLDDEQFH NGSPNHTENG DCSAPAATTT SKKKRNLPGN 60 PGKPYILTIY LPFYPDAEVV ALSPRTLMAT NRYICEVCHK GFQRDQNLQL HRRGHNLPWK 120 LKQRPTTQVK KRVYICPEPN CVHHDPNRAL GDLTGIKKHF CRKHGEKKWK CDKCAKRYAV 180 QSDWKAHAKI CGTREYRCDC GTIFSRKDSF VTHRAFCDAL TEENYKMNQT LAAAGGMMLH 240 NSNQELFSSS MPASDSNTIM NLSNSHDNNI DSIPPKPLSL NSHGSMISTD LDPIFNPRMP 300 RPASFSSVGS GTNNSSLQAV GSMYTSATAL LQKAAEMGAK ISDSSITPIL LRGFTGYSTS 360 SNSLNSSGSV HNASNIPIAA TTIGTNGLYV ANMEAAGGDP RPGYNYVPQT GLYDESSLFP 420 QPPSNGTATN LMERQVFMGG CDKMTVDFLG VEPSPAAAQS SFGKKRSYDG NIVMGLGYSN 480 SHQGLHNLPE W*

Sequence ? help Back to Top

Protein Sequence Length: 492 aa Download sequence Send to blast

MKGDFAPVVV VLGMIVVVEF EDDLDDEQFH NGSPNHTENG DCSAPAATTT SKKKRNLPGN  60
PGKPYILTIY LPFYPDAEVV ALSPRTLMAT NRYICEVCHK GFQRDQNLQL HRRGHNLPWK  120
LKQRPTTQVK KRVYICPEPN CVHHDPNRAL GDLTGIKKHF CRKHGEKKWK CDKCAKRYAV  180
QSDWKAHAKI CGTREYRCDC GTIFSRKDSF VTHRAFCDAL TEENYKMNQT LAAAGGMMLH  240
NSNQELFSSS MPASDSNTIM NLSNSHDNNI DSIPPKPLSL NSHGSMISTD LDPIFNPRMP  300
RPASFSSVGS GTNNSSLQAV GSMYTSATAL LQKAAEMGAK ISDSSITPIL LRGFTGYSTS  360
SNSLNSSGSV HNASNIPIAA TTIGTNGLYV ANMEAAGGDP RPGYNYVPQT GLYDESSLFP  420
QPPSNGTATN LMERQVFMGG CDKMTVDFLG VEPSPAAAQS SFGKKRSYDG NIVMGLGYSN  480
SHQGLHNLPE W*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-34	165	228	3	66	Zinc finger protein JACKDAW
5b3h_F	1e-34	165	228	3	66	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028062653.1	0.0	zinc finger protein GAI-ASSOCIATED FACTOR 1-like
Swissprot	Q9SCQ6	1e-103	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	A0A2R6P2T5	0.0	A0A2R6P2T5_ACTCH; Zinc finger protein like
STRING	cassava4.1_024252m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15900	5	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.2	1e-104	C2H2 family protein

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]