PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn220811
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GATA
Protein Properties Length: 255aa    MW: 28144.8 Da    PI: 8.4844
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn220811genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.37.7e-17187221135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 Cs+C +  Tp+WR gp g+ktLCnaCG++y++ +l
  Achn220811 187 CSHCLAQRTPQWRTGPMGPKTLCNACGVRYKSGRL 221
                 *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.101.3E-14180218IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.4181217IPR000679Zinc finger, GATA-type
SMARTSM004013.5E-16181235IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.57E-15182244No hitNo description
CDDcd002027.57E-12186233No hitNo description
PfamPF003201.3E-14187221IPR000679Zinc finger, GATA-type
PROSITE patternPS003440187212IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MDLCVSSEYQ PEQQLLSPPS RSKLGTLDDL FSTHNNLQEG DEDSSLEWLS IFVEDCFSSS  60
GSCLPPPPTP NTAPQTLKSE KVQPHQSTAG GVSVHEFVVP GRARSKRRRP GPITKSKTQL  120
GPLAQISPDP PLLHQAYWLA DSELILPKKE DEKEEAEGEK VEEVKRGRGN LGMEVQVGIQ  180
QGQGRRCSHC LAQRTPQWRT GPMGPKTLCN ACGVRYKSGR LLPEYRPAKS PTFVSYKHSN  240
SHKKVLEMRS MSNS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017241021.12e-84PREDICTED: GATA transcription factor 5-like
RefseqXP_023745112.11e-84GATA transcription factor 9-like
TrEMBLA0A2R6P2T00.0A0A2R6P2T0_ACTCH; GATA transcription factor
STRINGEOY112032e-81(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1515558
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36240.15e-37GATA transcription factor 7