PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn222051
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GATA
Protein Properties Length: 217aa    MW: 23577 Da    PI: 6.2661
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn222051genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.21.5e-15165199133
        GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 
                 C++Cg ++  Tp++Rrgp g++tLCnaCGl+++ k
  Achn222051 165 CTHCGISSksTPMMRRGPGGPRTLCNACGLFWANK 199
                 *****99999**********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132010.1875994IPR010399Tify domain
PfamPF062002.4E-76384IPR010399Tify domain
PfamPF062039.3E-1797139IPR010402CCT domain
PROSITE profilePS5101712.6397139IPR010402CCT domain
SuperFamilySSF577162.66E-10158200No hitNo description
SMARTSM004011.5E-10159212IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.8E-13164199IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440165192IPR000679Zinc finger, GATA-type
CDDcd002021.43E-11165199No hitNo description
PfamPF003204.2E-13165200IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MYGHTQSMNV SDQFAAAAAA AEEDSSAGGD DSVGNDGVEV VPPDAVYGDS VGPEAPLQRS  60
DCSNQLTLSF RGQVFVFDDV TTDKELDYPT RCSQPQRAAS LNRFRQKRKE RCFDKKIRYN  120
VRQEVALRMQ RNKGQFTSSK KSEGAARWST AEDSAQEDTP PETLCTHCGI SSKSTPMMRR  180
GPGGPRTLCN ACGLFWANKS EGVAYNSDYG TPIGTH*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028061947.11e-101GATA transcription factor 25-like isoform X1
SwissprotQ9LRH61e-67GAT25_ARATH; GATA transcription factor 25
TrEMBLA0A2R6R3701e-139A0A2R6R370_ACTCH; GATA transcription factor
STRINGVIT_18s0001g07720.t013e-82(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA140301012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.32e-66GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]