PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn222091
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MIKC_MADS
Protein Properties Length: 235aa    MW: 26632.3 Da    PI: 9.3559
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn222091genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.33.1e-261362251
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                ri++++ rqvtfskRrng+lKKA+EL +LCda+v vi+fs tgkly+++s
  Achn222091 13 RIDDSTSRQVTFSKRRNGLLKKAKELAILCDADVGVIVFSGTGKLYDFAS 62
                8***********************************************86 PP
2K-box55.62.4e-19781352785
       K-box  27 eienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 
                 + ++L ++  +++Ge+L+ Ls+keLq+Le+qLe slk +R kK+++l+++i+el  k +
  Achn222091  78 QFQQLMTT-WKIMGEELSGLSVKELQSLENQLEMSLKGVRMKKDQILIDEIQELNLKVD 135
                 56666666.89*******************************************98865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.006464IPR002100Transcription factor, MADS-box
SMARTSM004326.6E-39463IPR002100Transcription factor, MADS-box
CDDcd002651.46E-36563No hitNo description
SuperFamilySSF554553.66E-27570IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-27626IPR002100Transcription factor, MADS-box
PROSITE patternPS003500660IPR002100Transcription factor, MADS-box
PfamPF003192.5E-251360IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-272641IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-274162IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.13264175IPR002487Transcription factor, K-box
PfamPF014861.1E-1587134IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010440Biological Processstomatal lineage progression
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MERMGRGKIA IRRIDDSTSR QVTFSKRRNG LLKKAKELAI LCDADVGVIV FSGTGKLYDF  60
ASTRKYDSRR ITWLGWEQFQ QLMTTWKIMG EELSGLSVKE LQSLENQLEM SLKGVRMKKD  120
QILIDEIQEL NLKVDSDYLA THRDLFSQFF TSTNGSLIHQ ENVELYKKVN LISQENGELN  180
KKAFGTRDVN GANRNASLSN SLSLEGDLHV AVHLQLCQPQ QQNYDTQARA TKLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A8e-18463160MEF2C
5f28_B8e-18463160MEF2C
5f28_C8e-18463160MEF2C
5f28_D8e-18463160MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time in long-day photoperiod. Participates in the repression of FT expression and floral transition, by interacting closely with the FLC-SVP pathways (PubMed:24876250). Functions in the satellite meristemoid lineage of stomatal development (PubMed:17704216). {ECO:0000269|PubMed:17704216, ECO:0000269|PubMed:24876250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00410DAPTransfer from AT3G57230Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the micro RNA miR824. {ECO:0000269|PubMed:18579782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028105064.15e-97MADS-box transcription factor 23-like isoform X2
SwissprotA2RVQ59e-70AGL16_ARATH; Agamous-like MADS-box protein AGL16
TrEMBLA0A2R6R3501e-101A0A2R6R350_ACTCH; MADS-box transcription factor
STRINGVIT_18s0001g07900.t012e-94(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA6792056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.22e-67AGAMOUS-like 16
Publications ? help Back to Top
  1. Yang K,Jiang M,Le J
    A new loss-of-function allele 28y reveals a role of ARGONAUTE1 in limiting asymmetric division of stomatal lineage ground cell.
    J Integr Plant Biol, 2014. 56(6): p. 539-49
    [PMID:24386951]