PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn222131
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 431aa    MW: 48256.5 Da    PI: 5.5776
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn222131genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.96.3e-12260303654
                 HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
         HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                  ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +v+Y+k+L
  Achn222131 260 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTVDYMKDL 303
                 589*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.358254303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-15257316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-11260309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.54E-4261307No hitNo description
Gene3DG3DSA:4.10.280.102.0E-14261315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-9261303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00454354394No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MFSPKTPHQT KRTVKLFGLD SNLWVDPAQV PIPPSTQKLN ELRNGLLQTV KRVAEAAPLL  60
ETDWSERLLI HIGYSPRRLP ICNQSASNVR KLADILRQGI SNHAKELKDA KAMIDGNLGD  120
IIMSLQSRLD IMCEESDGES VLTVGAGEEG NDELSTGESF LLLNLQSLSW AGSICYQGTV  180
SLASNLSLPF DVQTLDNPLG DDLLLPEAKP EATLFQRSMP MINELYPIHQ PSDVPVTNLK  240
MMSERKKRVR KVEGQPSKNL MAERRRRKRL NDRLSMLRSI VPKISKMDRT SILGDTVDYM  300
KDLLERINNL QEEIEVGSSN DDLKLVNILK DLKPNEVLGR NSPKFDVERR NMETMIEICC  360
TPKPNLLLST VATLETLGLE IQHCVISCFH DFSMEASCSE LEELEQRAFI GSEEVKQALF  420
RNAGYGGRCL *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1245267KKRVRKVEGQPSKNLMAERRRRK
2262269ERRRRKRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028059786.12e-96transcription factor bHLH93-like
TrEMBLA0A2R6R3801e-175A0A2R6R380_ACTCH; Transcription factor bHLH93 like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7892497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.11e-82beta HLH protein 93