PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn222381

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

bHLH

Protein Properties

Length: 1034aa MW: 115671 Da PI: 4.8838

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn222381	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.8	1.1e-09	269	309	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR++iN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq Achn222381 269 RKRREKINERLRILQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 309 9****************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.862	259	308	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.27E-12	261	314	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.3E-11	264	315	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-11	265	314	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.80E-11	268	313	No hit	No description
Pfam	PF00010	6.3E-7	269	309	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00546	1.2E-9	725	767	IPR003892	Ubiquitin system component Cue
PROSITE profile	PS51140	15.279	725	768	IPR003892	Ubiquitin system component Cue
SuperFamily	SSF46934	3.83E-17	726	782	IPR009060	UBA-like
CDD	cd14364	7.02E-16	727	766	No hit	No description
Pfam	PF02845	4.3E-9	727	767	IPR003892	Ubiquitin system component Cue

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 1034 aa Download sequence Send to blast
MDPVGAFLDE EWESLSRFFS SEDGDFTAHF QGQNIFCPID HEATNMNMAP IDGSLLHSYA 60 AFTNLHYLSE ESSNSSHNNT AFLPNSSPEN HYFSGVNHFQ ALNNNSESME LYAMDNANNL 120 SVPISPDSVM EDILCLKEEK KNEKLENSDD PPTTVNLVKE LQLKRKNESI SETPKKKPRV 180 LRNAQKGRKN EKNKKNQKLS LKTNDDEEEE EEENNNGRIT NGQSSSCCSS ENDSNASHEE 240 LNGGQISESK GKTRASRGAA TDPQSLYARK RREKINERLR ILQNLVPNGT KVDISTMLEE 300 AVHYVKFLQL QIKAVAAGRG ADEGGLDPVE AQRIVDYLNG ELSRLLKLSP RDFWREVASD 360 PSLYNLLESF LQFRSRWYDF PYRGVKGIVA GIIVGEFELS RRVFMTLYRM CATPLVVLDL 420 ESSVVDLQIG ILVLGLLIVS VQETMQLLMT VYRACIPLFG ALLCITIELF SWMFIQVLFS 480 SHVHEDHGSS QLHADYLEVM DFINDAIVSM DAFVSAYKPA AVFFACPVEM SFGNEDLLGT 540 LARLHDSLLP SLRRGFRIIF TAGEDRLQGT SSDMLSMVTL SLKMLSTRIM NFGWKLLDVC 600 YLSFEVFESD FPLPAVTKMF PANIEDPDIR SEILVQTFRE ISEGYSHVQD SQSRGTFLQN 660 LEKNHKVMER IEFLQSTVWI LMEDEQFQYL SGIMKHPSGT NTKEMPSVPI SQTSTNTQVD 720 EDVAIVESKI SQIKDLFPDY GKGFLSACLE VYNQNPEDVI QRILEGTLHE DLQSLDTSLD 780 SIPPPKSTSM SRDDKGKGKL CEPIPPPSTN AASTIREQQT KGSSSSSLSS VGRFVRKSTL 840 TSPDSNTLDS RDEKNLAKTA VIISQLEYED EYEDSFDDLG FNVADTGVEE SETLGERMRS 900 NRVKPWETET GSSAPSDSSK WNSRKKPQFY VKDGKNYSYK VADSVAVANY NEAAIVNQAQ 960 RELIHGLGRG GNLPLGAVKK LMESKEEGED ESDVTEDGGR GNRGRGRGRR GGGRNNYRKD 1020 QAMKKHFAGV TGH*

Sequence ? help Back to Top

Protein Sequence Length: 1034 aa Download sequence Send to blast

MDPVGAFLDE EWESLSRFFS SEDGDFTAHF QGQNIFCPID HEATNMNMAP IDGSLLHSYA  60
AFTNLHYLSE ESSNSSHNNT AFLPNSSPEN HYFSGVNHFQ ALNNNSESME LYAMDNANNL  120
SVPISPDSVM EDILCLKEEK KNEKLENSDD PPTTVNLVKE LQLKRKNESI SETPKKKPRV  180
LRNAQKGRKN EKNKKNQKLS LKTNDDEEEE EEENNNGRIT NGQSSSCCSS ENDSNASHEE  240
LNGGQISESK GKTRASRGAA TDPQSLYARK RREKINERLR ILQNLVPNGT KVDISTMLEE  300
AVHYVKFLQL QIKAVAAGRG ADEGGLDPVE AQRIVDYLNG ELSRLLKLSP RDFWREVASD  360
PSLYNLLESF LQFRSRWYDF PYRGVKGIVA GIIVGEFELS RRVFMTLYRM CATPLVVLDL  420
ESSVVDLQIG ILVLGLLIVS VQETMQLLMT VYRACIPLFG ALLCITIELF SWMFIQVLFS  480
SHVHEDHGSS QLHADYLEVM DFINDAIVSM DAFVSAYKPA AVFFACPVEM SFGNEDLLGT  540
LARLHDSLLP SLRRGFRIIF TAGEDRLQGT SSDMLSMVTL SLKMLSTRIM NFGWKLLDVC  600
YLSFEVFESD FPLPAVTKMF PANIEDPDIR SEILVQTFRE ISEGYSHVQD SQSRGTFLQN  660
LEKNHKVMER IEFLQSTVWI LMEDEQFQYL SGIMKHPSGT NTKEMPSVPI SQTSTNTQVD  720
EDVAIVESKI SQIKDLFPDY GKGFLSACLE VYNQNPEDVI QRILEGTLHE DLQSLDTSLD  780
SIPPPKSTSM SRDDKGKGKL CEPIPPPSTN AASTIREQQT KGSSSSSLSS VGRFVRKSTL  840
TSPDSNTLDS RDEKNLAKTA VIISQLEYED EYEDSFDDLG FNVADTGVEE SETLGERMRS  900
NRVKPWETET GSSAPSDSSK WNSRKKPQFY VKDGKNYSYK VADSVAVANY NEAAIVNQAQ  960
RELIHGLGRG GNLPLGAVKK LMESKEEGED ESDVTEDGGR GNRGRGRGRR GGGRNNYRKD  1020
QAMKKHFAGV TGH*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	175	188	KKPRVLRNAQKGRK
2	268	273	RKRREK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028053545.1	0.0	activating signal cointegrator 1 complex subunit 2
TrEMBL	A0A2R6R378	0.0	A0A2R6R378_ACTCH; Activating signal cointegrator 1 complex subunit like
STRING	XP_009757864.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33880.1	9e-35	ROOT HAIR DEFECTIVE 6-LIKE 2