PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn222511
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HD-ZIP
Protein Properties Length: 290aa    MW: 32319.6 Da    PI: 9.0615
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn222511genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.23.3e-19146200256
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 rk+ ++tkeq  +Le+ F+++++++ ++++ LAk+l+L+ rqV vWFqNrRa+ k
  Achn222511 146 RKKLRLTKEQSVILEDSFKEQSTLTPKQKQVLAKQLNLQPRQVEVWFQNRRARTK 200
                 788899***********************************************98 PP
2HD-ZIP_I/II121.44.4e-39146234190
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                  +kk+rl+keq+ +LE+sF+e+++L+p++K+ la++L+lqprqv+vWFqnrRARtk+kq+E++ye Lk+++++l++en+rL+ke +eL+ +
   Achn222511 146 RKKLRLTKEQSVILEDSFKEQSTLTPKQKQVLAKQLNLQPRQVEVWFQNRRARTKLKQTEVEYELLKKCCETLTDENRRLHKEIQELK-A 234
                  69*************************************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-19131196IPR009057Homeodomain-like
SuperFamilySSF466895.99E-19138203IPR009057Homeodomain-like
PROSITE profilePS5007117.2142202IPR001356Homeobox domain
SMARTSM003896.4E-17144206IPR001356Homeobox domain
CDDcd000861.18E-16146203No hitNo description
PfamPF000461.8E-16146200IPR001356Homeobox domain
PROSITE patternPS000270177200IPR017970Homeobox, conserved site
SMARTSM003401.0E-22202245IPR003106Leucine zipper, homeobox-associated
PfamPF021831.0E-9202235IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MSPFRGRKRG GGYFGCNKVK YLQKMVIEDI CNTGLTLGST AISNPQNHNK KKPSSSSLKF  60
DRDFPSLTLG LLPDQDEGQI GSKIGACKVD VESTVLYRQA SSVSLSSSHS LSSVKREREI  120
SGEEVEEERA GSKLSDDQDD QEGGARKKLR LTKEQSVILE DSFKEQSTLT PKQKQVLAKQ  180
LNLQPRQVEV WFQNRRARTK LKQTEVEYEL LKKCCETLTD ENRRLHKEIQ ELKALNVATP  240
FYVQIPAATL TMCPSCERIG STENASKNLF SIGGKPHFYS PFTHPSAAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1194202RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00477DAPTransfer from AT4G37790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028079507.11e-112homeobox-leucine zipper protein HAT22-like
RefseqXP_028079508.11e-112homeobox-leucine zipper protein HAT22-like
SwissprotP466041e-89HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A2R6R3810.0A0A2R6R381_ACTCH; Homeobox-leucine zipper protein
STRINGcassava4.1_013986m4e-99(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.13e-84HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]