PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn223361
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family TALE
Protein Properties Length: 510aa    MW: 56423.1 Da    PI: 7.1978
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn223361genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.51.3e-093073441954
                 HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                 F +  ++yp+ +++  LAk++gL+ +qV++WF N R +
  Achn223361 307 FDQflHPYPTDTDKIMLAKQTGLSRNQVSNWFINARVR 344
                 555569******************************88 PP
2BELL98.26.7e-32179247472
        BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                 e  +kk++L+s+l+eV++rYk y++q+q+vi+sFe vagl +a+p+++lA ka+S+hFr+Lk+ai++q+
  Achn223361 179 EQLRKKSRLISMLDEVYRRYKYYYQQMQAVIASFESVAGLSNAAPFAKLAIKAMSKHFRSLKNAITDQL 247
                 5568**************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005749.1E-47112245IPR006563POX domain
PfamPF075262.8E-38117244IPR006563POX domain
PROSITE profilePS5007111.985285348IPR001356Homeobox domain
CDDcd000866.81E-12288349No hitNo description
SMARTSM003891.3E-9288352IPR001356Homeobox domain
SuperFamilySSF466892.48E-16290355IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-26291352IPR009057Homeodomain-like
PfamPF059201.9E-17305344IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MAEGFEPYHV PQQSRRDKLR VGGCVDNLQG SQHLYMDPQS SIHINPNPIQ EINCNTLLYS  60
PQNLRFFDQS FNGGEVLVYK PEPLSLSLSS SHNPYVMGSD LSRSSVPLGP FTGYSSILKG  120
SRFLRPAQQL LEEICDVGRG VYAENVAAET GLMEGENLGG SGVGDAAVSG GDGAGDGGEQ  180
LRKKSRLISM LDEVYRRYKY YYQQMQAVIA SFESVAGLSN AAPFAKLAIK AMSKHFRSLK  240
NAITDQLQFL SKAQNYQKDE SPRFGNSDNV YSQRPIHNNS GFLDQPVWRP QRGLPERAVT  300
VLRSWLFDQF LHPYPTDTDK IMLAKQTGLS RNQVSNWFIN ARVRLWKPMV EEIHMLETRQ  360
ATKAPQREEL SADRPGDHLL PTPTSLPSEN PSTSTQRAQD LPSKRTRNEF ADISMGTEDQ  420
VRLSYQNLSR HQHVGTGMST GGGSGGVSLT LGLHQNSGFG LSEPFPINAA RRFGLDTNSE  480
GYVVGSFEDQ NRQFGRDVIG GQLLHDFVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5bng_A3e-14294352159Homeobox protein Meis2
5bng_B3e-14294352159Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028056974.10.0BEL1-like homeodomain protein 9
SwissprotQ9LZM81e-121BLH9_ARATH; BEL1-like homeodomain protein 9
TrEMBLA0A2R6RX440.0A0A2R6RX44_ACTCH; BEL1-like homeodomain protein 9
STRINGVIT_08s0007g01290.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35202237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.11e-100TALE family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Pabón-Mora N,Wong GK,Ambrose BA
    Evolution of fruit development genes in flowering plants.
    Front Plant Sci, 2014. 5: p. 300
    [PMID:25018763]
  3. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]
  4. Andrés F, et al.
    Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE.
    Plant Physiol., 2015. 169(3): p. 2187-99
    [PMID:26417007]
  5. Bencivenga S,Serrano-Mislata A,Bush M,Fox S,Sablowski R
    Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis.
    Dev. Cell, 2016. 39(2): p. 198-208
    [PMID:27666746]
  6. Sehra B,Franks RG
    Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development.
    Front Plant Sci, 2017. 8: p. 1712
    [PMID:29085379]
  7. Simonini S,Stephenson P,Østergaard L
    A molecular framework controlling style morphology in Brassicaceae.
    Development, 2018.
    [PMID:29440299]