PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn224031
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ZF-HD
Protein Properties Length: 191aa    MW: 21238 Da    PI: 7.0742
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn224031genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer47.15.5e-151563458
  ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                 v Y+eC++N   + G ++   C Ef+ + ge      l Ca CgCHRn+HR+e++
   Achn224031 15 VSYRECQRNFTSRRGHQVGHACAEFVVA-GE-----DLLCATCGCHRNYHRKEEV 63
                 89*************************9.55.....5***************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.1E-141562IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257744.0E-71761IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152313.6061761IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466894.3E-12110176IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.2E-20110176IPR009057Homeodomain-like
TIGRFAMsTIGR015659.0E-20117173IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MANNNENARR CATIVSYREC QRNFTSRRGH QVGHACAEFV VAGEDLLCAT CGCHRNYHRK  60
EEVAVEVEPG IDQVLRQMAA AAPLPQLLIL AAHVPLAPPP EDDIPGDGEI EQESEPRKRD  120
RARLTPAQRE MMRAYAGRLG WSLQGHNEEE LFRFCSDIGI IPQVFKVWMN NNRRKYANTG  180
ETSAAAGGRV *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6RGK15e-36A0A2R6RGK1_ACTCH; Zinc-finger homeodomain protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA108891118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.12e-23homeobox protein 22