PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn224541
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 200aa    MW: 22581.7 Da    PI: 8.199
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn224541genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2513.5e-1669119255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  y GVr ++ +g +++eIrd +    + +r++lg+f taeeAa a+++a+  ++g
  Achn224541  69 SYIGVRKRP-WGTYASEIRDSTR---HgARVWLGTFTTAEEAALAYDQAAFVMRG 119
                 599******.**********422...25***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.73E-2768129No hitNo description
SMARTSM003802.6E-3269133IPR001471AP2/ERF domain
PfamPF008478.0E-1169119IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-2069128IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.6E-2969128IPR001471AP2/ERF domain
PROSITE profilePS5103220.77169127IPR001471AP2/ERF domain
PRINTSPR003677.2E-97081IPR001471AP2/ERF domain
PRINTSPR003677.2E-993109IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MAEVKLDFLP ESSFSWSKLI FLDDSVDPSE EIISSDENFL PHFLAEKVKE KPLETDSSSE  60
KKDLKKEKSY IGVRKRPWGT YASEIRDSTR HGARVWLGTF TTAEEAALAY DQAAFVMRGR  120
LARLNFPTDK VRESLREMKC RCENGSSSAS ALKEINKKRL KILGGKRVSK KERVKQENGN  180
MLVFEDLGAD LLDELLNSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-25701291574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028056765.13e-56ethylene-responsive transcription factor 1B-like
SwissprotA0A3Q7I5Y91e-45ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A2R6RDZ11e-142A0A2R6RDZ1_ACTCH; Ethylene-responsive transcription factor
STRINGXP_009796372.11e-49(Nicotiana sylvestris)
STRINGMigut.K00942.1.p4e-50(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31230.18e-25ethylene-responsive element binding factor 15
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]