PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn225571
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 225aa    MW: 24913.6 Da    PI: 8.6129
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn225571genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.72.9e-1857106255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+GVr +  +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g
  Achn225571  57 TYRGVRIRN-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAAQAIKG 106
                 69****887.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.6E-3157115IPR001471AP2/ERF domain
PfamPF008471.2E-1257106IPR001471AP2/ERF domain
SMARTSM003801.4E-3457120IPR001471AP2/ERF domain
PROSITE profilePS5103222.64257114IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-2157115IPR016177DNA-binding domain
CDDcd000181.10E-2958116No hitNo description
PRINTSPR003674.4E-105869IPR001471AP2/ERF domain
PRINTSPR003674.4E-108096IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MKMQQSKFDC VNSLSQSTRS TPKEGKAIKG QRRVEETKNG NEHRKRHKSG GDEKHPTYRG  60
VRIRNWGKWV SEIREPRKKS RIWLGTYPTA EMAARAHDVA AQAIKGKSAY LNFPELAHEL  120
PRPATTSPKD IQAAAAMAAA SLFSGEATRA EPSRAGLPCS HSSTTLSSSE NTTQESVNSP  180
SNHDDDTFFD LPDLSDGCCY YASSWQLAAS ELSFRLDDPF SWEY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-17541141172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ8698530.0GQ869853.1 Actinidia deliciosa ethylene response factor 2 (ERF2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028051115.18e-98ethylene-responsive transcription factor ERF034
SwissprotQ8LBQ71e-64ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A2R6R9891e-163A0A2R6R989_ACTCH; Ethylene-responsive transcription factor
TrEMBLD8VD291e-163D8VD29_ACTDE; Ethylene response factor 2
STRINGXP_009613551.12e-71(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.12e-60ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]