PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn228911
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family BBR-BPC
Protein Properties Length: 188aa    MW: 20672.7 Da    PI: 10.6389
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn228911genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind206.52.8e-6320187130301
   GAGA_bind 130 eklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnG 228
                 +  +++  e++++++k+kk++ kr+++  p++ +++ +kkk+++s+k++++ +     k e+k+++ + n+ ++D st+P+P CsCtG  r+CYk G G
  Achn228911  20 QPEKSTDFETKPPKVKKKKSTTKRSNQFAPRVWEKQ-PKKKPSASRKTKTQFE--AGIKVERKNLNAGSNESKWDFSTVPPPYCSCTGDARVCYKCG-G 114
                 344566677888888888888888888888876655.4554666644444444..579*************************************99.9 PP

   GAGA_bind 229 GWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                 GWqS+CCt++iS yPLP s++++gaR++grKm +ga+  lL +La+eG dls+pvDLkdhWA+ Gtn fvti+
  Achn228911 115 GWQSSCCTINISEYPLPKSPTKPGARVSGRKMTSGAYGNLLHRLASEGRDLSHPVDLKDHWARLGTNNFVTIK 187
                 ************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012262.9E-411187IPR010409GAGA-binding transcriptional activator
PfamPF062172.8E-5616187IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MDPKPPIAAV PIRSVAPTTQ PEKSTDFETK PPKVKKKKST TKRSNQFAPR VWEKQPKKKP  60
SASRKTKTQF EAGIKVERKN LNAGSNESKW DFSTVPPPYC SCTGDARVCY KCGGGWQSSC  120
CTINISEYPL PKSPTKPGAR VSGRKMTSGA YGNLLHRLAS EGRDLSHPVD LKDHWARLGT  180
NNFVTIK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028058471.12e-73protein BASIC PENTACYSTEINE7-like
SwissprotO822862e-51BPC7_ARATH; Protein BASIC PENTACYSTEINE7
TrEMBLA0A2R6PIK71e-135A0A2R6PIK7_ACTCH; Protein BASIC like
STRINGGorai.008G222300.11e-67(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA137141415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35550.42e-53basic pentacysteine 7