PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn229061
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NAC
Protein Properties Length: 222aa    MW: 25127.3 Da    PI: 4.6499
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn229061genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM37.38.4e-121657143
         NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykve 43
                lppGfrFhPtdeel+++yL +kv ++ + + ++i evd++k e
  Achn229061 16 LPPGFRFHPTDEELITHYLSQKVIDTCFCA-RAIGEVDLNKNE 57
                79**********************999888.88*****99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.68E-131256IPR003441NAC domain
PfamPF023651.2E-71750IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MEKDSILNRE DEQMELPPGF RFHPTDEELI THYLSQKVID TCFCARAIGE VDLNKNEWVI  60
YRVFQKSSDG KKIHISGLMP SKMPPVMDCS VSAHAPSCFS NPTEEKPHRN DIVDSFKSPL  120
LASCSSSKAS NFSPRPIPFP DSLFSTQFLP NVGNLHYPDF QDQSILGLLL ENNEMDMKRD  180
FKSEFSPVSM DILSYHEVGQ RNYEDPINSG GPVDIDCLWN Y*
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028111639.14e-45NAC domain-containing protein 100-like
SwissprotQ9FLJ23e-20NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A2R6RKB61e-118A0A2R6RKB6_ACTCH; NAC domain-containing protein
STRINGcassava4.1_025545m5e-56(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.12e-22NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]