PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn229941

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

WRKY

Protein Properties

Length: 352aa MW: 38597.2 Da PI: 10.2918

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn229941	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	99.3	2.5e-31	280	337	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +dp ++++tYeg+Hnh+ Achn229941 280 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPAMLIVTYEGDHNHS 337 99**********************988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	2.0E-6	257	276	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	4.5E-33	266	337	IPR003657	WRKY domain
PROSITE profile	PS50811	30.767	273	339	IPR003657	WRKY domain
SuperFamily	SSF118290	1.27E-26	276	337	IPR003657	WRKY domain
SMART	SM00774	9.8E-38	278	338	IPR003657	WRKY domain
Pfam	PF03106	7.9E-27	280	336	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MVKSSHLLPD PFALLPSSMA SFDHSYSYRD INIKRERERI LKPRLLGVVH VLKTSSPLFS 60 TLSLLDVVPA MAVELMMGYR TTTFASRMEE NAVVKETASG LESVEKFIKL LSQSQQKQPP 120 PEGQLSTNPD QRELERDCTA VADAAVTKFK RVISLLGRTR TGHARFRRAP SISPPIQPQL 180 DASEIRNDFL TAKTINFSYS PAISGPSSFV SSLTAGEQTL SSSAAFHISN LSQASSAAGK 240 LPLKRKCRSS ENAGSGKKLR QKRVVRVPAI SSKMADIPPD DYSWRKYGQK PIKGSPHPRG 300 YYKCSSVRGC PARKHVERAL DDPAMLIVTY EGDHNHSLSI AETTGLILES S*

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MVKSSHLLPD PFALLPSSMA SFDHSYSYRD INIKRERERI LKPRLLGVVH VLKTSSPLFS  60
TLSLLDVVPA MAVELMMGYR TTTFASRMEE NAVVKETASG LESVEKFIKL LSQSQQKQPP  120
PEGQLSTNPD QRELERDCTA VADAAVTKFK RVISLLGRTR TGHARFRRAP SISPPIQPQL  180
DASEIRNDFL TAKTINFSYS PAISGPSSFV SSLTAGEQTL SSSAAFHISN LSQASSAAGK  240
LPLKRKCRSS ENAGSGKKLR QKRVVRVPAI SSKMADIPPD DYSWRKYGQK PIKGSPHPRG  300
YYKCSSVRGC PARKHVERAL DDPAMLIVTY EGDHNHSLSI AETTGLILES S*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-21	266	338	2	73	WRKY transcription factor 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid. {ECO:0000269\|PubMed:11449049}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028051958.1	1e-124	probable WRKY transcription factor 15
Swissprot	O22176	1e-76	WRK15_ARATH; Probable WRKY transcription factor 15
TrEMBL	A0A2R6S1D3	0.0	A0A2R6S1D3_ACTCH; WRKY transcription factor 7
STRING	VIT_07s0031g00080.t01	1e-113	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1220	24	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23320.1	2e-74	WRKY DNA-binding protein 15

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Van Aken O, et al. Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases. Plant Physiol., 2016. 171(3): p. 2150-65 [PMID:27208304] Liu F, et al. Interactions of WRKY15 and WRKY33 transcription factors and their roles in the resistance of oilseed rape to Sclerotinia infection. Plant Biotechnol. J., 2018. 16(4): p. 911-925 [PMID:28929638]