PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn231041
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family M-type_MADS
Protein Properties Length: 209aa    MW: 23769.7 Da    PI: 6.0597
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn231041genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.72.1e-201563149
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                k i n+  r +tfskRr+g++KKA+ELS+LC+++va+++fs  gk + +
  Achn231041 15 KMIVNENARRITFSKRRQGLFKKASELSTLCGVDVAIVLFSLGGKAFSF 63
                5688999**********************************99987766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.151767IPR002100Transcription factor, MADS-box
SMARTSM004323.1E-29766IPR002100Transcription factor, MADS-box
CDDcd002652.20E-31883No hitNo description
SuperFamilySSF554554.19E-27884IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-19929IPR002100Transcription factor, MADS-box
PfamPF003195.2E-231763IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-192944IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-194465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MEKKQTQGRK KIEMKMIVNE NARRITFSKR RQGLFKKASE LSTLCGVDVA IVLFSLGGKA  60
FSFGSPYVDS IVDRFLSHNG PSQPNEDAND TGPVVAYQEV TMRQLSQQYH ELNKRLEAEK  120
NRNRAPKSRS FDSFINELGL DQLEELKRTM VELKKNVAQQ HDKMLSDGSS KHALEQEKEE  180
EIEEVLNTEK NDGDEDDAST IPHDWLKL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A5e-16887182Myocyte-specific enhancer factor 2A
3kov_B5e-16887182Myocyte-specific enhancer factor 2A
3kov_I5e-16887182Myocyte-specific enhancer factor 2A
3kov_J5e-16887182Myocyte-specific enhancer factor 2A
3p57_A5e-16887182Myocyte-specific enhancer factor 2A
3p57_B5e-16887182Myocyte-specific enhancer factor 2A
3p57_C5e-16887182Myocyte-specific enhancer factor 2A
3p57_D5e-16887182Myocyte-specific enhancer factor 2A
3p57_I5e-16887182Myocyte-specific enhancer factor 2A
3p57_J5e-16887182Myocyte-specific enhancer factor 2A
5f28_A6e-16887283MEF2C
5f28_B6e-16887283MEF2C
5f28_C6e-16887283MEF2C
5f28_D6e-16887283MEF2C
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028099862.14e-78agamous-like MADS-box protein AGL62
STRINGXP_006487057.18e-42(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.13e-31AGAMOUS-like 29