PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn231961
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family M-type_MADS
Protein Properties Length: 216aa    MW: 24643.8 Da    PI: 6.6717
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn231961genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF58.39.8e-191765149
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                kr e++  r +tfskRr g+ KKA+EL++LC++e a++ifs++gk + +
  Achn231961 17 KRRESEEDRLITFSKRRVGLYKKASELCTLCGTELAILIFSPSGKPFSF 65
                56789999************************************97776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.3E-22668IPR002100Transcription factor, MADS-box
PRINTSPR004047.5E-131131IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-201685IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.5251769IPR002100Transcription factor, MADS-box
PfamPF003195.8E-212065IPR002100Transcription factor, MADS-box
PRINTSPR004047.5E-133146IPR002100Transcription factor, MADS-box
PRINTSPR004047.5E-134667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MTDNKKTRGR QRIDTSKRRE SEEDRLITFS KRRVGLYKKA SELCTLCGTE LAILIFSPSG  60
KPFSFAHPNI EVIARRFLKL EPQSNDKTND IMDACLQNRI NELNERLTQL SIEVEAEKER  120
GRKLAQMDRT PQNKPLCNQN INELGDDDAQ RLKAWLLELQ VRINNRLEEL VANSAHVACS  180
PTDPLHPNVF SLSYDYEGLH PNVASSSYDH EGMDF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028089285.13e-82agamous-like MADS-box protein AGL29
TrEMBLA0A2R6Q6S31e-159A0A2R6Q6S3_ACTCH; Agamous-like MADS-box protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.12e-30AGAMOUS-like 29