PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn232701
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 421aa    MW: 46721.5 Da    PI: 5.3915
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn232701genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.75.5e-10233280455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Achn232701 233 SHSLAERVRREKISERMKYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 280
                 8**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-15227288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.36E-9227284No hitNo description
Gene3DG3DSA:4.10.280.103.3E-16229287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.618229279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-7233280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.3E-10235285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009911Biological Processpositive regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MNRALPEMLH CTDLSVLERQ QARIKWQQES FHQQQRYFDE NEFSGFSGPF QAQQFQGLVN  60
RDMGINGLVK ADPGLDNGWA DFGQFDGEGS GLGPGGFGLG SGFEMNHGIS RTISCPSAAA  120
EVEVEVEVAA ETKQRESALP EKMSSAVGRE SFKKRKADKN QNLKAIAEEE SKKKRIKECN  180
EEGESRITEQ NSNNNNIKRE TSADTSKDNS KVSEVQKPDY IHVRARRGQA TDSHSLAERV  240
RREKISERMK YLQDLVPGCN KITGKAGMLD EIINYVQSLQ RQVEQFLSMK LAAVNPTLNF  300
NIDNLFAKEV FPACTSNFPM GASSEIANPA YLQFNPLQQV VSCSGLEIGI SPDMAIRRTI  360
SAPIPIPETF LDSSCFDHRN IKDQVVQVVL VMNETSMTML AFPVMDRGQE PTGGPPFRAE  420
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153174KRKADKNQNLKAIAEEESKKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4470252e-42AM447025.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X110477.3, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028054263.10.0transcription factor HBI1-like
RefseqXP_028054264.10.0transcription factor HBI1-like
TrEMBLA0A2R6RHG30.0A0A2R6RHG3_ACTCH; Transcription factor bHLH63 like
STRINGEOX980001e-153(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA65382330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.12e-62cryptochrome-interacting basic-helix-loop-helix 1