PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn233761
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C3H
Protein Properties Length: 386aa    MW: 42863.1 Da    PI: 7.7248
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn233761genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.13.6e-09107129326
                 S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                 ++lC+++ + G C yGdrC++ H+
  Achn233761 107 EKLCNYWVQ-GKCTYGDRCRYLHS 129
                 579******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.7981945IPR000571Zinc finger, CCCH-type
SMARTSM003560.961944IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.46104131IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-7104129IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-5106130IPR000571Zinc finger, CCCH-type
PfamPF006428.9E-7107129IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-7108127IPR000571Zinc finger, CCCH-type
SuperFamilySSF509785.19E-28126315IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.101.2E-25128350IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003209.4181218IPR001680WD40 repeat
PROSITE profilePS5029419.037188311IPR017986WD40-repeat-containing domain
SMARTSM003200.0062225262IPR001680WD40 repeat
PfamPF004000.035230262IPR001680WD40 repeat
PROSITE profilePS5008212.213232271IPR001680WD40 repeat
SMARTSM003205.2E-4265302IPR001680WD40 repeat
PfamPF004000.0013267301IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MDLEGNKRVF HRLGPSSDNR NQKVCYHWRA GKCDRFPCPY LHRELPQQAK NGTASSKRPL  60
GFADDHQVAR RNPNFSNNSS SWGRPHGGRG GGRGGGDGGS EIVKKAEKLC NYWVQGKCTY  120
GDRCRYLHSW STGGFSLLTE LEGHQECAGV INLGVEVGCM LSEGPWVFVG LPNVVKAWNI  180
QTMADLTLSG PVGQVYALVV GNDLLFAGTQ DGTILAWRFN AATNCFDPAA TLKGHTLAVV  240
TLVVGANRLY SGSMDNSIRV WSIETLQCIQ TLSEHSSVVM SVLCWDQFLL SCSLDKTIKV  300
WVATESGNLE VTYTHNEEHL QEVRIYPPKK HYPSDSKNRQ NPILRTEDHK QLDNEGEDYH  360
HSSLSSSLYT QHNQEPFSSP NIIRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A1e-141383018320Tako8
6g6n_A1e-141383018320Tako8
6g6n_B1e-141383018320Tako8
6g6n_C1e-141383018320Tako8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028065236.10.0zinc finger CCCH domain-containing protein 48-like
SwissprotQ9FNZ21e-145C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A2R6PM500.0A0A2R6PM50_ACTCH; Zinc finger CCCH domain-containing protein
STRINGEMJ192311e-157(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28842134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.11e-140zinc finger WD40 repeat protein 1