PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn233831
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 256aa    MW: 28680.9 Da    PI: 9.5552
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn233831genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.1e-1373125155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 +r+ h e+Er+RR+++ + ++ Lr+llP       ++K s ++   +Av+YI++L+
  Achn233831  73 KRVVHREIERQRRQEMGNLYASLRTLLPLeY---IKGKRSISDHMNEAVNYINHLR 125
                 7999*************************77...********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.01E-1469139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.82E-1170129No hitNo description
PROSITE profilePS5088813.9172124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-1073140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-1073124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-478130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MFSSLHKSDE LVFQTLSLPR NQQEIQQDPS DIGIAILESG NLTTITIIKR KKNSVGIDRE  60
DNDGGASGKK EKKRVVHREI ERQRRQEMGN LYASLRTLLP LEYIKGKRSI SDHMNEAVNY  120
INHLRKNIKE LEIKREKLKN LSSSRDPLAS TTSGSSKNCL PNSVTVSPCY GGVEILVTSE  180
KCFVLSKVFG LLVDERMNVV SYLSTEVNGR LFHTIRSEVS DQMYVDPSTL QQKLCGVMNG  240
KLIESPTNLP MPRMG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17284KRVVHREIERQRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028077142.17e-81transcription factor bHLH118-like
TrEMBLA0A2R6PM170.0A0A2R6PM17_ACTCH; Transcription factor bHLH126 like
STRINGcassava4.1_030073m6e-56(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59824109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25400.12e-31bHLH family protein