PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn234471
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HD-ZIP
Protein Properties Length: 247aa    MW: 28067.5 Da    PI: 8.0008
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn234471genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.74.6e-1952105356
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 k+ +++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rqV +WFqNrRa++k
  Achn234471  52 KKKRLSMEQVKALEKSFEVGNKLEPERKIQLARALGLQPRQVAIWFQNRRARWK 105
                 456699***********************************************9 PP
2HD-ZIP_I/II129.11.8e-4151141191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  ekk+rls eqvk+LE+sFe  +kLeperK +lar+Lglqprqva+WFqnrRAR+ktkqlE+dy+ L r+++alk++n++L++++++L++el
   Achn234471  51 EKKKRLSMEQVKALEKSFEVGNKLEPERKIQLARALGLQPRQVAIWFQNRRARWKTKQLERDYDLLMRKFEALKNDNDALQAHNHKLHAEL 141
                  69**************************************************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.11E-2042109IPR009057Homeodomain-like
PROSITE profilePS5007117.28147107IPR001356Homeobox domain
SMARTSM003897.4E-1950111IPR001356Homeobox domain
PfamPF000462.5E-1652105IPR001356Homeobox domain
CDDcd000861.12E-1652108No hitNo description
Gene3DG3DSA:1.10.10.603.8E-2054114IPR009057Homeodomain-like
PRINTSPR000311.0E-57887IPR000047Helix-turn-helix motif
PROSITE patternPS00027082105IPR017970Homeobox, conserved site
PRINTSPR000311.0E-587103IPR000047Helix-turn-helix motif
PfamPF021833.7E-14107147IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MESRKNVKAQ SKPVQVQAQM MRRSLSFSGA GTKLCDQEDE MSDDGYSQLG EKKKRLSMEQ  60
VKALEKSFEV GNKLEPERKI QLARALGLQP RQVAIWFQNR RARWKTKQLE RDYDLLMRKF  120
EALKNDNDAL QAHNHKLHAE LLALKGREST GIGSFNLNKE TEGSWSNGSD ENCVDVNLGT  180
TTRTPSTNMS PFYSHHLIQT SSRSDGLQCP KIDQTVPDDQ SFCNMLISGI DDPSGFWQWP  240
EQQHLH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199107RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0098219e-49AP009821.1 Lotus japonicus genomic DNA, chromosome 2, clone: LjT39I02, TM0377a, complete sequence.
GenBankBT1461769e-49BT146176.1 Lotus japonicus clone JCVI-FLLj-12B12 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028124247.11e-111homeobox-leucine zipper protein ATHB-13-like isoform X1
SwissprotQ8S7W92e-66HOX21_ORYSJ; Homeobox-leucine zipper protein HOX21
TrEMBLA0A2R6P9L51e-170A0A2R6P9L5_ACTCH; Homeobox-leucine zipper protein like
STRINGXP_009783877.13e-91(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8482498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.11e-67HD-ZIP family protein