PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn234481
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family WRKY
Protein Properties Length: 520aa    MW: 57437 Da    PI: 7.8673
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn234481genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.12.4e-30229288159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 ++Dg++WrKYGqK  kg+++pr+YYrCt a  Cpv+k+v+r+a+d +++++tYeg+Hnh+
  Achn234481 229 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApACPVRKQVQRCADDMSILITTYEGTHNHP 288
                 58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.4E-32214290IPR003657WRKY domain
SuperFamilySSF1182902.48E-27222290IPR003657WRKY domain
PROSITE profilePS5081128.667224290IPR003657WRKY domain
SMARTSM007741.3E-36229289IPR003657WRKY domain
PfamPF031065.2E-27230288IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MLTWQGYRPP WPNGHRPRLL TGLSCNIFSL YEASKMEEQL ESTKAEMTKV REENVRLRSM  60
LKQIEKDYQS LQSRFIETIQ HQPKKNSISN SSINREEIEE PELVSLCLGF RSPSEPKRDD  120
NKINNMGGSS KTNREEERFK KEGLKLGLDC KFEEERCKSD CAEVIATDQS PENSLEETTK  180
EELKDAETWP PSKVLKTVRS SGDDELSQQQ SSVKRARVSV RARCDTATMN DGCQWRKYGQ  240
KIAKGNPCPR AYYRCTVAPA CPVRKQVQRC ADDMSILITT YEGTHNHPLP VSATAMASTT  300
SAAASMLLSG SSTSQPTTVT ATASSNHLHS SNFTLFDSTS RARPPFYFPN TSAQANFPTI  360
TLDLTSTSSP HLNMLSSTPR FPSTSLSFSS SESNILPTIW GNGYLNNGTF PYNKTNIGSV  420
ISYQRPSQEQ FNNQVSSQQY LTETLTKAIT TDPSFRSVIA AAISSLAGDN GGSGGESFAK  480
NVEWRESGSS LMFLQQPPLP FSLPKNGSGS GAESRDHTN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-20216290174WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028121796.11e-161probable WRKY transcription factor 72
TrEMBLA0A2R6P9K10.0A0A2R6P9K1_ACTCH; WRKY transcription factor 72
STRINGXP_010256554.11e-139(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19452464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.18e-74WRKY DNA-binding protein 72