PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn234561
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family LBD
Protein Properties Length: 270aa    MW: 30955.2 Da    PI: 5.5722
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn234561genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601201.3e-3710108198
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 aCaaCk++rrkCa+dC+lapyfpa+qpk+f+n+h+lFG+ n++k+l++l+++e +++am+s++ye+++r + PvyG++gvi++l  ql q+ +el++++
  Achn234561  10 ACAACKYQRRKCADDCPLAPYFPASQPKTFQNAHRLFGVCNMMKILRQLETQEqKDEAMKSVLYESNIREKFPVYGCCGVIRNLYCQLVQAIEELKYVH 108
                 7************************************************776659****************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.0379111IPR004883Lateral organ boundaries, LOB
PfamPF031955.4E-3510107IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MTVKGGTSQA CAACKYQRRK CADDCPLAPY FPASQPKTFQ NAHRLFGVCN MMKILRQLET  60
QEQKDEAMKS VLYESNIREK FPVYGCCGVI RNLYCQLVQA IEELKYVHVR LAMCGEEWHN  120
HQIVDHHYAL GPELQFGVNC SSDALAMLHQ PFEANPLVAT GNNEDIAKSY WGPLVNYNTH  180
NNNSIPIQAQ FIPSPSFPDQ QETEVLDYDD ILFDTMADDR QSYIESKEAC ESRYVPTSLI  240
RNNEFCVYVR LVLILRREFH MQLRIVVEE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-2461167118LOB family transfactor Ramosa2.1
5ly0_B5e-2461167118LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028092612.11e-103LOB domain-containing protein 27-like
TrEMBLA0A2R6P9G81e-176A0A2R6P9G8_ACTCH; LOB domain-containing protein
STRINGXP_008230975.11e-70(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14492375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.13e-42LOB domain-containing protein 27