PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn235091
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 157aa    MW: 16992.9 Da    PI: 6.6626
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn235091genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.10.000357233955
                TCHHHHHHHHHHHHHHH CS
         HLH 39 sKaeiLekAveYIksLq 55
                +Ka++L +++eY+k+Lq
  Achn235091  7 DKASMLDEVIEYLKQLQ 23
                8***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.58E-6546IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-6534IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.62E-4527No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MVDFQTDKAS MLDEVIEYLK QLQAQVQMMG RMNMHPSMNM MLPMTTLQQQ LQFSAMMAAV  60
APMGMGMPGM GMGPMGCMDI NAIAGRPNIP GIHPVLHPAA TAFMPRTAAS WDGTGPGDPL  120
STFLACQSQP MTMDAYSRIA TLYQQLHQHP PSCSKN*
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015582839.16e-49transcription factor UNE10
SwissprotQ8GZ386e-20UNE10_ARATH; Transcription factor UNE10
TrEMBLA0A2R6S1101e-106A0A2R6S110_ACTCH; Transcription factor like
STRINGXP_002511647.12e-48(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43672132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.11e-21bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]