PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn235351

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

SBP

Protein Properties

Length: 216aa MW: 23873.1 Da PI: 9.978

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn235351	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	34.9	4.1e-11	65	90	53	78
TT--SS--S-STTTT-------S--- CS SBP 53 sefDeekrsCrrrLakhnerrrkkqa 78 efD ekrsCr+rL++hn+rrrk q+ Achn235351 65 GEFDGEKRSCRKRLDGHNRRRRKLQP 90 59*********************886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF103612	3.14E-8	64	93	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.7E-5	66	87	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MVPNQLGYKV VIMSLVQPKV RVWHTHLNLD PSSIGLGFGC VSAILKPRSW LSEANSNGFA 60 SNVAGEFDGE KRSCRKRLDG HNRRRRKLQP ESFYMTSGNF FSNHQASNYN GRDKQLPFLL 120 GSDPEKSNQA DAEVPICQRI VNNRGPAETG SQKVLSDGLA QPINSKCGFS LLLTHATRTS 180 VTSSSHLMPQ GMIKLNQPIG LHFDLIQYSC SRQME*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	70	87	KRSCRKRLDGHNRRRRKL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028107377.1	1e-38	squamosa promoter-binding-like protein 16
Refseq	XP_028107378.1	1e-38	squamosa promoter-binding-like protein 16
Refseq	XP_028107379.1	1e-38	squamosa promoter-binding-like protein 16
Refseq	XP_028107380.1	1e-38	squamosa promoter-binding-like protein 16
TrEMBL	A0A2R6RZ39	3e-40	A0A2R6RZ39_ACTCH; Squamosa promoter-binding-like protein
STRING	VIT_14s0068g01780.t01	1e-18	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	3e-10	SBP family protein