PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn237121

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

FAR1

Protein Properties

Length: 793aa MW: 90596 Da PI: 8.2223

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn237121	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	62.8	9.8e-20	71	145	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY+ YA ++GF++r+ + ++s+ +g++++r+fvCskeg++++ +rtgC ++v+k+++gkw++++++ eHnHel Achn237121 71 EFYKLYAAQAGFRIRIGQLYRSRIDGSVISRRFVCSKEGFQTN--------------SRTGCPVFIRVQKSDSGKWVLANIKAEHNHEL 145 6*************************************987..............589*************************98 PP
2	FAR1	67.7	3e-21	224	299	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 kfY +YA ++GF+vr+ + +sk++g+it+r+fvCskeg++++ +r+gC a ++++++++g+w+v++l++eHnH+l+ Achn237121 224 KFYYAYAASTGFKVRIGQLFRSKHDGSITSRRFVCSKEGHQHP--------------SRVGCGAFMRIQRQESGRWVVDRLQKEHNHDLV 299 6************************************9998..............4899*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.0E-15	71	145	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.0E-16	224	299	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.7E-28	400	492	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.373	678	714	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.0E-6	686	711	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.0E-7	689	716	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 793 aa Download sequence Send to blast
MMTLFPNLRY LLMCFSDSDM NREELGNIIT VRAKPAGTLL VKNNGHREDE GESRLEPHVG 60 LEFDSAEDAQ EFYKLYAAQA GFRIRIGQLY RSRIDGSVIS RRFVCSKEGF QTNSRTGCPV 120 FIRVQKSDSG KWVLANIKAE HNHELGLPGE IRPPHIQRKA FPAPRSSIAV SSRTGIRSLE 180 KEDGRPSPSG VIDVKRLKME EAEEVPKVEP YKGLEFSSAN EAYKFYYAYA ASTGFKVRIG 240 QLFRSKHDGS ITSRRFVCSK EGHQHPSRVG CGAFMRIQRQ ESGRWVVDRL QKEHNHDLVS 300 PMDSSRIIAT PPKGFREEGS CGLENLDLVE TNGGLSLVKI GRQNDVGSEW YPVLFEYFQS 360 RQAEDMGFFY AVEVDDCKCM SVFWADGRSR FSCSQFGDAI IFDTSYRSSS YLVPFASFIG 420 INHHRQPVLL GCALIANESE ESFTWVFQTW LKAMSGRRPL SIIADQDKAI QHSIAQVFPG 480 THHRFSMWQI KAKEQQYLGA LLSMDAGFKY EYETCICQSQ TPNEFDSAWN VLLNKYNLKE 540 NPWLKEMYRT RKSWVPLYIR STFFAGISID GSMKSFFGTF LNAFTPLNEF VIRYEKALEQ 600 RREEERKEDF NSFNLQVVLH TKDPIEEQGR RLYTITIFKA FQKELLECYS YVGIKINVEG 660 AISRYLVQKC GNGGDERNTV AFNASNLNVS CSCKMFEFEG VLCRHALKIF QIMNITELPS 720 RYILHRWTKS AKYGILRDVD SGGGSQDFRA LMTWSLREEA RNYIEAGAAS LERCKLAFEI 780 MQEGGRNLCW QT*

Sequence ? help Back to Top

Protein Sequence Length: 793 aa Download sequence Send to blast

MMTLFPNLRY LLMCFSDSDM NREELGNIIT VRAKPAGTLL VKNNGHREDE GESRLEPHVG  60
LEFDSAEDAQ EFYKLYAAQA GFRIRIGQLY RSRIDGSVIS RRFVCSKEGF QTNSRTGCPV  120
FIRVQKSDSG KWVLANIKAE HNHELGLPGE IRPPHIQRKA FPAPRSSIAV SSRTGIRSLE  180
KEDGRPSPSG VIDVKRLKME EAEEVPKVEP YKGLEFSSAN EAYKFYYAYA ASTGFKVRIG  240
QLFRSKHDGS ITSRRFVCSK EGHQHPSRVG CGAFMRIQRQ ESGRWVVDRL QKEHNHDLVS  300
PMDSSRIIAT PPKGFREEGS CGLENLDLVE TNGGLSLVKI GRQNDVGSEW YPVLFEYFQS  360
RQAEDMGFFY AVEVDDCKCM SVFWADGRSR FSCSQFGDAI IFDTSYRSSS YLVPFASFIG  420
INHHRQPVLL GCALIANESE ESFTWVFQTW LKAMSGRRPL SIIADQDKAI QHSIAQVFPG  480
THHRFSMWQI KAKEQQYLGA LLSMDAGFKY EYETCICQSQ TPNEFDSAWN VLLNKYNLKE  540
NPWLKEMYRT RKSWVPLYIR STFFAGISID GSMKSFFGTF LNAFTPLNEF VIRYEKALEQ  600
RREEERKEDF NSFNLQVVLH TKDPIEEQGR RLYTITIFKA FQKELLECYS YVGIKINVEG  660
AISRYLVQKC GNGGDERNTV AFNASNLNVS CSCKMFEFEG VLCRHALKIF QIMNITELPS  720
RYILHRWTKS AKYGILRDVD SGGGSQDFRA LMTWSLREEA RNYIEAGAAS LERCKLAFEI  780
MQEGGRNLCW QT*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028065942.1	0.0	protein FAR1-RELATED SEQUENCE 7-like isoform X1
Refseq	XP_028065943.1	0.0	protein FAR1-RELATED SEQUENCE 7-like isoform X1
Swissprot	Q9M8J3	0.0	FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBL	A0A2R6P4H3	0.0	A0A2R6P4H3_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRING	Migut.N00138.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7347	21	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	0.0	FAR1-related sequence 7

Publications ? help Back to Top
Ritter A, et al. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Nat Commun, 2017. 8: p. 15235 [PMID:28492275] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]