PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn237291
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NAC
Protein Properties Length: 342aa    MW: 38343 Da    PI: 5.4759
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn237291genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.65.7e-5461331128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                 lppGfrFhPtdeelv +yLk+kveg  +el evi+ +d+yk++Pw+Lp k  + +++ ew+fF++rd+ky++g+r+nrat++gyWkatgkd++v++ ++
  Achn237291   6 LPPGFRFHPTDEELVGYYLKRKVEGLAIEL-EVIPVIDLYKFDPWELPeKsFLPKRDMEWFFFCPRDRKYPNGSRTNRATRAGYWKATGKDRKVVC-QS 102
                 79****************************.99**************95344555788**************************************.99 PP

         NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                 +++g +ktLvfy+grap g +tdWvmheyrl
  Achn237291 103 SVTGYRKTLVFYRGRAPMGDRTDWVMHEYRL 133
                 99***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-614156IPR003441NAC domain
PROSITE profilePS5100558.4686156IPR003441NAC domain
PfamPF023659.1E-307133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008283Biological Processcell proliferation
GO:0071365Biological Processcellular response to auxin stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MGGATLPPGF RFHPTDEELV GYYLKRKVEG LAIELEVIPV IDLYKFDPWE LPEKSFLPKR  60
DMEWFFFCPR DRKYPNGSRT NRATRAGYWK ATGKDRKVVC QSSVTGYRKT LVFYRGRAPM  120
GDRTDWVMHE YRLCDNLSQG SPSFQGAFAL CRVVKKNETQ KTSDVHGEPK GKGVGSSSSN  180
GDFTSTGMAS DPVIISDDTT FQTSQLCNGS NFSSPVSSPY PTMPMVENEP FSMETNPSSL  240
WVSPDLILDS SKEFPQGQGA RGYFPGYELP NSTTQWQPYS LCEILPSLSF SNFTEGVEIG  300
DGLSRFNSMS PYMGFYGNED MPLPYEGYDH QTNSLRNPKP F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-52516116170NO APICAL MERISTEM PROTEIN
1ut4_B9e-52516116170NO APICAL MERISTEM PROTEIN
1ut7_A9e-52516116170NO APICAL MERISTEM PROTEIN
1ut7_B9e-52516116170NO APICAL MERISTEM PROTEIN
3swm_A1e-51516119173NAC domain-containing protein 19
3swm_B1e-51516119173NAC domain-containing protein 19
3swm_C1e-51516119173NAC domain-containing protein 19
3swm_D1e-51516119173NAC domain-containing protein 19
3swp_A1e-51516119173NAC domain-containing protein 19
3swp_B1e-51516119173NAC domain-containing protein 19
3swp_C1e-51516119173NAC domain-containing protein 19
3swp_D1e-51516119173NAC domain-containing protein 19
4dul_A9e-52516116170NAC domain-containing protein 19
4dul_B9e-52516116170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:25182467, ECO:0000269|PubMed:27986917}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00439DAPTransfer from AT4G17980Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding in the flowering stem. {ECO:0000269|PubMed:21911380}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028083522.10.0NAC domain-containing protein 71-like
SwissprotO496971e-104NAC71_ARATH; NAC domain-containing protein 71
TrEMBLA0A2R6PMG60.0A0A2R6PMG6_ACTCH; NAC domain-containing protein
STRINGcassava4.1_011029m1e-166(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA62561635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.11e-104NAC domain containing protein 71
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Asahina M,Satoh S
    Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues.
    J. Plant Res., 2015. 128(3): p. 381-8
    [PMID:25736731]
  3. Matsuoka K, et al.
    Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls.
    Plant Cell Physiol., 2016. 57(12): p. 2620-2631
    [PMID:27986917]