PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn237321
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 228aa    MW: 24875.5 Da    PI: 5.7263
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn237321genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.5e-0579101123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 y+C+ C + F++   L  H+++H
  Achn237321  79 YTCTFCRREFKSAQALGGHMNVH 101
                 9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.17E-676106No hitNo description
Gene3DG3DSA:3.30.160.608.9E-477104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.09479106IPR007087Zinc finger, C2H2
PfamPF139122.0E-579102IPR007087Zinc finger, C2H2
SMARTSM003550.005779101IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MAADLSLLSL THPQTLSHSQ DQHQHQPPNP NPNPSSTATG LWMWNPKPAV AEDDDEWEVR  60
AFEEDTNHAM GTTWPPRSYT CTFCRREFKS AQALGGHMNV HRRDRAKLHQ GPPSAAASTS  120
TTLLIPTQEF MGNGGFCFLY SLPNPNPCLD SPSTLLSISP YQPNKSLSPN CPPCISFPVA  180
SPSVNSSFCH SSNTEPSASI DNENNKTNHG PAIEEELDLE LRLGRNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-1274101229superman protein
2l1o_A1e-1274101229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028081857.12e-80zinc finger protein 10-like
TrEMBLA0A2R6QNX11e-166A0A2R6QNX1_ACTCH; Transcriptional regulator SUPERMAN like
STRINGcassava4.1_023237m3e-72(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59532133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.12e-36C2H2 family protein