PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn237771

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

Nin-like

Protein Properties

Length: 402aa MW: 44447.8 Da PI: 8.3127

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn237771	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	25.8	2.1e-08	305	327	26	48
RWP-RK 26 gvclTvLKriCRqyGIkRWPhRk 48 +v+ +++K iCRq+GI WP+ k Achn237771 305 QVGRSTMKHICRQHGILWWPSHK 327 59******************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02042	6.2E-7	306	329	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence Send to blast
MIICMVVTGT WLGAQGVIKC SNRENGESET ELRVICVVNL RPAMTDQIFG SYALLPLQLV 60 TASYVPSNGL NFTEQNTAPF LVSDGDVVGS SNSSEDDVMF QLPNIQVGFS MDSADGYDSF 120 SHKRISDIEN HVIPSSHVKK LNEKMLKALS LLKESSEGGI FAQVWVPIKH GDRYILCTCE 180 QPYLLDQNHQ MLVPYREAVN LRTTAPPTLH PQCLSKNKRA ALGEIADVLR AVCHAHRLPL 240 PLAWIPCSTI HIVDGVTRKV FVREVSKTSN EKCTLFIEET TSYVNDQEMH GFVHACTHHY 300 LNEGQVGRST MKHICRQHGI LWWPSHKRSK SKRLPYKSKD VNGSTKAVHE PVNQASLATG 360 PLSAGGSPSR PAGLKCTDKH TQQEMSRDRG LSLSKQHIGK T*

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence Send to blast

MIICMVVTGT WLGAQGVIKC SNRENGESET ELRVICVVNL RPAMTDQIFG SYALLPLQLV  60
TASYVPSNGL NFTEQNTAPF LVSDGDVVGS SNSSEDDVMF QLPNIQVGFS MDSADGYDSF  120
SHKRISDIEN HVIPSSHVKK LNEKMLKALS LLKESSEGGI FAQVWVPIKH GDRYILCTCE  180
QPYLLDQNHQ MLVPYREAVN LRTTAPPTLH PQCLSKNKRA ALGEIADVLR AVCHAHRLPL  240
PLAWIPCSTI HIVDGVTRKV FVREVSKTSN EKCTLFIEET TSYVNDQEMH GFVHACTHHY  300
LNEGQVGRST MKHICRQHGI LWWPSHKRSK SKRLPYKSKD VNGSTKAVHE PVNQASLATG  360
PLSAGGSPSR PAGLKCTDKH TQQEMSRDRG LSLSKQHIGK T*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	326	332	KRSKSKR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028126781.1	1e-43	protein NLP9-like isoform X2
Refseq	XP_028126782.1	1e-43	protein NLP9-like isoform X2
TrEMBL	A0A2R6PWZ8	7e-39	A0A2R6PWZ8_ACTCH; Uncharacterized protein
STRING	Gorai.005G126000.1	1e-37	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	2e-29	Nin-like family protein